View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1127_low_4 (Length: 507)
Name: NF1127_low_4
Description: NF1127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1127_low_4 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 98 - 300
Target Start/End: Original strand, 32099703 - 32099910
Alignment:
| Q |
98 |
aactaagtgatgatcatttgctctgaaaa-aataaaactaagtgatgaatcaccttaacaaatgttgtacaacaatatattacatttgcccatagttata |
196 |
Q |
| |
|
||||||||||| ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32099703 |
aactaagtgataatcatttcctctaaaaaaaataaaactaagtgatgaatcaccttaacaaatgttgtacaacaatatattacatttgcccatagttata |
32099802 |
T |
|
| Q |
197 |
agtttgttttag-----nnnnnnnttagctcaacatataatcttcgagccaaattaataaatacgnnnnnnncaagtctatatatttcaatccctataac |
291 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32099803 |
agtttgttttagaaagaaaaaaaattagctcaacatataatcttcgagccaaattaataaatacg-ttttttcaagtctatatatttcaatccctataac |
32099901 |
T |
|
| Q |
292 |
ttatctgcg |
300 |
Q |
| |
|
|||||||| |
|
|
| T |
32099902 |
atatctgcg |
32099910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 372 - 479
Target Start/End: Original strand, 32099973 - 32100079
Alignment:
| Q |
372 |
ttgttatattgatccgagtgaaactagattcgactccttaatggttgaaagcttgtggatagaaaaaatgttagaaaggtaactagagggtctgtcgggt |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32099973 |
ttgttatattgatccgagtgaaactagattcgactccttaatggttgaaagcctgtggat-gaaaaaatgttagaaaggtaactagagggtcagtcgggt |
32100071 |
T |
|
| Q |
472 |
ttcctaat |
479 |
Q |
| |
|
|||||||| |
|
|
| T |
32100072 |
ttcctaat |
32100079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 37197 - 37092
Alignment:
| Q |
1 |
cgtctcaatatttattttcctttgatattacgatgctatattttacatcttcaatctaatcgcacgtttaggctcacctactgcgttaacaaacacaaac |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37197 |
cgtctcaatacttattttcctttgatattacgatgctatattttacatcttctatctaatcgcacgtttaggctcacctactgcgttaacaaacacaaac |
37098 |
T |
|
| Q |
101 |
taagtg |
106 |
Q |
| |
|
|||||| |
|
|
| T |
37097 |
taagtg |
37092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University