View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1127_low_5 (Length: 498)
Name: NF1127_low_5
Description: NF1127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1127_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 14610065 - 14610549
Alignment:
| Q |
1 |
tcgcaaacacaatattgagccaaggaatcctgattcttactttgcctcaaatgtcgatccaactaagaacaagagcagattagattttgtgaaggataga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14610065 |
tcgcaaacacaatattgagccaaggaatcctgattcttactttgcctcaaatgtcgatccaactaagaacaagagcagattagattttgtgaaggataga |
14610164 |
T |
|
| Q |
101 |
agaagggtgaagagggagtatgatgagttcaaggtgcgtataaatggccttccggagtcaattaggagaagatctgatgcatttaacgcaagggaggaaa |
200 |
Q |
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| T |
14610165 |
agaagggtgaagagggagtatgatgagttcaaggtgcgtataaatggccttccggagtcaattaggagaagatctgatgcatttaacgcaagggaggaaa |
14610264 |
T |
|
| Q |
201 |
tgaagaagatgaagcaattcaaggagagtggggctgatccttctaagcctatcaaggtaataaaggctacctggatggctgatggcacccattggcctgg |
300 |
Q |
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| T |
14610265 |
tgaagaagatgaagcaattcaaggagagtggggctgatccttctaagcctatcaaggtaataaaggctacctggatggctgatggcacccattggcctgg |
14610364 |
T |
|
| Q |
301 |
tacgtgggcttcttcttctagcgaacatgctaaaggtgaccattctggaatacttcaggtattttcttgtgtattatatctaagaataaatttgatcata |
400 |
Q |
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| T |
14610365 |
tacgtgggcttcttcttctagcgaacatgctaaaggtgaccattctggaatacttcaggtattttcttgtgtattatatctaagaataaatttgatcata |
14610464 |
T |
|
| Q |
401 |
aacttacacttacatttcatgtgtatgggggtgtgcgcgcaagtgtatatattatatatcttaatttaactatatgcgtgtatat |
485 |
Q |
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| T |
14610465 |
aacttacacttacatttcatgtgtacgggggtgtgcgcgcaagtgtatatattatatatcttaatttaactatatgcgtgtatat |
14610549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 14598411 - 14598018
Alignment:
| Q |
1 |
tcgcaaacacaatattgagccaaggaatcctgattcttactttgcctcaaatgtcgatccaactaagaacaagagcagattagattttgtgaaggataga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||| | | | ||||| |||||||| ||| |
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| T |
14598411 |
tcgcaaacacaatattgagccaaggaatcctgattcttactttgcgttaaaaatcgatccaaccaagaacaagagtaaactggatttcgtgaaggacaga |
14598312 |
T |
|
| Q |
101 |
agaagggtgaagagggagtatgatgagttcaaggtgcgtataaatggccttccggagtcaattaggagaagatctgatgcatttaacgcaagggaggaaa |
200 |
Q |
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||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| || || |||||||||||||||||||||||||| ||||| ||||||| |
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| T |
14598311 |
agaagggtgaaaagggagtacgatgagttcaaagtgcgcataaatggccttcctgattctattaggagaagatctgatgcatttaatgcaagagaggaaa |
14598212 |
T |
|
| Q |
201 |
tgaagaagatgaagcaattcaaggagagtggggctgatccttctaagcctatcaaggtaataaaggctacctggatggctgatggcacccattggcctgg |
300 |
Q |
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| T |
14598211 |
tgaagatgatgaagcatttgaaggagactggggctgaccctttggagcctgttaaagtattgaaggccacttggatggctgatggcacccattggcccgg |
14598112 |
T |
|
| Q |
301 |
tacgtgggcttcttcttctagcgaacatgctaaaggtgaccattctggaatacttcaggtattttcttgtgtat--tatatctaagaataaatt |
392 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||| || | ||| |||||||||||||||||| |
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| T |
14598111 |
cacttggggttcttcttctagcgaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatattatatatctaagaataaatt |
14598018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 29918938 - 29918886
Alignment:
| Q |
83 |
gattttgtgaaggatagaagaagggtgaagagggagtatgatgagttcaaggt |
135 |
Q |
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| T |
29918938 |
gattttgtgaaggatcgtagaaggctgaagcgtgagtatgatgagttcaaggt |
29918886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 47918295 - 47918349
Alignment:
| Q |
81 |
tagattttgtgaaggatagaagaagggtgaagagggagtatgatgagttcaaggt |
135 |
Q |
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||||||||||||||||| | |||||| ||||| | |||||||||||||| ||||| |
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| T |
47918295 |
tagattttgtgaaggatcgtagaaggctgaagcgtgagtatgatgagtttaaggt |
47918349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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