View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1127_low_7 (Length: 377)

Name: NF1127_low_7
Description: NF1127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1127_low_7
NF1127_low_7
[»] chr8 (14 HSPs)
chr8 (87-377)||(6353450-6353740)
chr8 (89-315)||(6290420-6290646)
chr8 (42-231)||(6364469-6364658)
chr8 (87-317)||(6425200-6425430)
chr8 (87-347)||(7460552-7460812)
chr8 (50-229)||(6392094-6392274)
chr8 (87-231)||(6371300-6371444)
chr8 (45-229)||(6411258-6411442)
chr8 (89-238)||(6333173-6333322)
chr8 (89-238)||(6322606-6322755)
chr8 (89-238)||(6275745-6275894)
chr8 (101-231)||(6264927-6265057)
chr8 (138-228)||(6458262-6458352)
chr8 (138-223)||(6452174-6452259)
[»] chr5 (1 HSPs)
chr5 (90-223)||(9603035-9603168)
[»] chr2 (2 HSPs)
chr2 (93-225)||(42694394-42694526)
chr2 (98-225)||(42687136-42687263)
[»] chr3 (1 HSPs)
chr3 (93-228)||(36743886-36744021)


Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 87 - 377
Target Start/End: Complemental strand, 6353740 - 6353450
Alignment:
Q  87 tgtagacataccttccaagtgaaacaccagctcctttagtgttctacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaagga 186  Q
    |||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6353740 tgtagacataccttccaagtgaaacaccggctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaagga 6353641  T
Q  187 atgggatagaatatatgattacgatgtctacaatgatttgggtgagcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcgagcgatttc 286  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6353640 atgggaaagaatatatgattacgatgtctacaatgatttgggtgagcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcaagcgatttc 6353541  T
Q  287 ccttaccctcgaaggggaagaaccggcagaagaaaaactaaaacaggttaggctacaaacacttgtgtcatattttggactaaacatgtgt 377  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||    
T  6353540 ccttaccctcgaaggggaagaactggcagaagaaaaactaaaacaggttaggccacaaacacttctgtcagattttggactaaacatgtgt 6353450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 89 - 315
Target Start/End: Complemental strand, 6290646 - 6290420
Alignment:
Q  89 tagacataccttccaagtgaaacaccagctcctttagtgttctacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaat 188  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6290646 tagacataccttccaagtgaaacaccagctccattagtgtactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaat 6290547  T
Q  189 gggatagaatatatgattacgatgtctacaatgatttgggtgagcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcgagcgatttccc 288  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6290546 gggaaagaatatatgattacgatgtctacaatgatttaggtgagcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcgagcaatttccc 6290447  T
Q  289 ttaccctcgaaggggaagaaccggcag 315  Q
    |||||||||||||||||||||||||||    
T  6290446 ttaccctcgaaggggaagaaccggcag 6290420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 42 - 231
Target Start/End: Complemental strand, 6364658 - 6364469
Alignment:
Q  42 aaattctcttttccaaaaacttgacacaatcaatgactacaattttgtagacataccttccaagtgaaacaccagctcctttagtgttctacagacaaga 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  6364658 aaattctcttttccaaaaacttgacacaatcaatgactacaattttgtagacataccttccaagtgaaacaccagctcctttagtctactacagacaaga 6364559  T
Q  142 agaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaatgatttgggtga 231  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  6364558 agaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttgggtga 6364469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 87 - 317
Target Start/End: Complemental strand, 6425430 - 6425200
Alignment:
Q  87 tgtagacataccttccaagtgaaacaccagctcctttagtgttctacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaagga 186  Q
    |||||||||||||||||||||||||||| ||||| || |||| ||| ||||||||||| |||||||||||||||||||||||||  ||||||||||||||    
T  6425430 tgtagacataccttccaagtgaaacaccggctccattggtgtactatagacaagaagagttgaagactttaagaggagatggaaaaggagagcgcaagga 6425331  T
Q  187 atgggatagaatatatgattacgatgtctacaatgatttgggtgagcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcgagcgatttc 286  Q
    |||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||   ||||  |||| | ||||||| |||||||||   ||     
T  6425330 atgggaaaggatctatgattacgatgtctacaatgatttgggtgagcctgactcgaaacctaccttgggtcgtccagttcttggaggatcgagcaccttg 6425231  T
Q  287 ccttaccctcgaaggggaagaaccggcagaa 317  Q
    ||||||||||||||||| ||||| |||||||    
T  6425230 ccttaccctcgaagggggagaacaggcagaa 6425200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 87 - 347
Target Start/End: Complemental strand, 7460812 - 7460552
Alignment:
Q  87 tgtagacataccttccaagtgaaacaccagctcctttagtgttctacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaagga 186  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7460812 tgtagacataccttccaagtgcaacaccagctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaagga 7460713  T
Q  187 atgggatagaatatatgattacgatgtctacaatgatttgggtgagcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcgagcgatttc 286  Q
    |||||| |||||||||||||| |||||||||||||| |||||||| || |||  |||| ||   ||||| ||||   ||  ||| ||| |  |  | ||     
T  7460712 atgggacagaatatatgattatgatgtctacaatgacttgggtgatcccgaccagaaagctagcttggctcgtcctgttgctggaggacctggaaacttg 7460613  T
Q  287 ccttaccctcgaaggggaagaaccggcagaagaaaaactaaaacaggttaggctacaaaca 347  Q
    ||||||||||||||||||||||||||||||| |  | |||||| |||||||||| ||||||    
T  7460612 ccttaccctcgaaggggaagaaccggcagaaaaccatctaaaaaaggttaggctccaaaca 7460552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 6392274 - 6392094
Alignment:
Q  50 ttttccaaaaacttgaca-caatcaatgactacaattttgtagacataccttccaagtgaaacaccagctcctttagtgttctacagacaagaagaattg 148  Q
    |||| ||||||||||||| ||  |||||  || |||||||||| ||||||||| ||| |||||||||||||| ||| ||| |||||||||||||||||||    
T  6392274 tttttcaaaaacttgacagcacccaatggttaaaattttgtaggcataccttctaagggaaacaccagctccattactgtactacagacaagaagaattg 6392175  T
Q  149 aagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaatgatttgggt 229  Q
    || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  6392174 aatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttgggt 6392094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 87 - 231
Target Start/End: Complemental strand, 6371444 - 6371300
Alignment:
Q  87 tgtagacataccttccaagtgaaacaccagctcctttagtgttctacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaagga 186  Q
    ||||||||||||||| |||||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||    
T  6371444 tgtagacataccttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaaga 6371345  T
Q  187 atgggatagaatatatgattacgatgtctacaatgatttgggtga 231  Q
    ||||||||| || ||||| ||||||||||||||||||||||||||    
T  6371344 atgggataggatctatgactacgatgtctacaatgatttgggtga 6371300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 45 - 229
Target Start/End: Complemental strand, 6411442 - 6411258
Alignment:
Q  45 ttctcttttccaaaaacttgacacaatcaatgactacaattttgtagacataccttccaagtgaaacaccagctcctttagtgttctacagacaagaaga 144  Q
    ||||||||| |||||||||||||  | |||||  || |||| ||||| |||||||||||||| || |||||   || ||||||| |||||   |||||||    
T  6411442 ttctctttttcaaaaacttgacagcaccaatggttaaaattatgtaggcataccttccaagtcaagcaccacaaccattagtgtactacatcaaagaaga 6411343  T
Q  145 attgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaatgatttgggt 229  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| |||||||||||||||||||||    
T  6411342 attgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgatttgggt 6411258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 89 - 238
Target Start/End: Complemental strand, 6333322 - 6333173
Alignment:
Q  89 tagacataccttccaagtgaaacaccagctcctttagtgttctacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaat 188  Q
    ||||| ||||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||    
T  6333322 tagacgtaccttccaagcgaaacaccagctccattagtctactacagacaagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaat 6333223  T
Q  189 gggatagaatatatgattacgatgtctacaatgatttgggtgagcctgac 238  Q
     |||||| || ||||| |||||||| |||||||| |||||||| ||||||    
T  6333222 cggataggatctatgactacgatgtttacaatgacttgggtgatcctgac 6333173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 89 - 238
Target Start/End: Complemental strand, 6322755 - 6322606
Alignment:
Q  89 tagacataccttccaagtgaaacaccagctcctttagtgttctacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaat 188  Q
    |||||||||||||||||||||||||||||||| ||||| | ||| ||| |||||||||||||||||||||||||||||||||| ||  |||||||||||     
T  6322755 tagacataccttccaagtgaaacaccagctccattagtctactatagagaagaagaattgaagactttaagaggagatggaacgggtcagcgcaaggaac 6322656  T
Q  189 gggatagaatatatgattacgatgtctacaatgatttgggtgagcctgac 238  Q
      |||||||| ||||| |||||||| |||||||| |||||||| ||||||    
T  6322655 acgatagaatctatgactacgatgtttacaatgacttgggtgatcctgac 6322606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 89 - 238
Target Start/End: Complemental strand, 6275894 - 6275745
Alignment:
Q  89 tagacataccttccaagtgaaacaccagctcctttagtgttctacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaat 188  Q
    |||||||| |||||||||||||||||| |||| ||||| | ||| ||||||||||| ||||| |||||||||||||||||||| |||||||| || ||||    
T  6275894 tagacatatcttccaagtgaaacaccacctccattagtctactatagacaagaagagttgaacactttaagaggagatggaacaggagagcgtaaagaat 6275795  T
Q  189 gggatagaatatatgattacgatgtctacaatgatttgggtgagcctgac 238  Q
    |||| || || ||||| |||||||||||||||||| ||||||| ||||||    
T  6275794 gggaaaggatctatgactacgatgtctacaatgatgtgggtgatcctgac 6275745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 6265057 - 6264927
Alignment:
Q  101 ccaagtgaaacaccagctcctttagtgttctacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatat 200  Q
    |||||||||||||| |||||  | || | ||| ||||||  ||| |||||||||||||||||||||||||| || |||||||| |||||||| ||| | |    
T  6265057 ccaagtgaaacacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagttt 6264958  T
Q  201 atgattacgatgtctacaatgatttgggtga 231  Q
    ||||||| ||||| |||||||||||||||||    
T  6264957 atgattatgatgtttacaatgatttgggtga 6264927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 6458352 - 6458262
Alignment:
Q  138 aagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaatgatttggg 228  Q
    ||||||| ||| ||||| |||||||||||||||||||||||||||| |||  ||||||| | |||||||| ||| | || |||||||||||    
T  6458352 aagaagagttgcagactctaagaggagatggaactggagagcgcaaagaagcggatagagtttatgattatgatatttataatgatttggg 6458262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 6452259 - 6452174
Alignment:
Q  138 aagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaatatatgattacgatgtctacaatgat 223  Q
    ||||||| ||| ||| | |||||||||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||||    
T  6452259 aagaagagttgcagaatctaagaggagatggaaccggagaacgcaaagaatgggataggatatacgattatgatgtttataatgat 6452174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 223
Target Start/End: Original strand, 9603035 - 9603168
Alignment:
Q  90 agacataccttccaagtgaaacaccagctcctttagtgttctacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatg 189  Q
    ||||||| ||||||||| ||||||||||||| ||||| | ||||||||||||||||||| | | | ||||||||||||| |||||| | || || |||||    
T  9603035 agacatatcttccaagtcaaacaccagctccattagtctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatg 9603134  T
Q  190 ggatagaatatatgattacgatgtctacaatgat 223  Q
    ||| ||| | |||||||| |||||||||||||||    
T  9603135 ggaaagagtttatgattatgatgtctacaatgat 9603168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 93 - 225
Target Start/End: Complemental strand, 42694526 - 42694394
Alignment:
Q  93 cataccttccaagtgaaacaccagctcctttagtgttctacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatggga 192  Q
    |||| ||||| ||||||||||| ||||| |||||    || ||| ||||||||||||| | |||||||||||||||||| ||||| ||||| ||||||||    
T  42694526 catatcttcctagtgaaacaccggctccattagtccattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatggga 42694427  T
Q  193 tagaatatatgattacgatgtctacaatgattt 225  Q
     ||||| |||||||| |||||||||||||||||    
T  42694426 aagaatctatgattatgatgtctacaatgattt 42694394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 42687136 - 42687263
Alignment:
Q  98 cttccaagtgaaacaccagctcctttagtgttctacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggatagaa 197  Q
    |||||||||||||||||| ||||  ||||    || ||| ||||||||||| | | |||||| ||||||||||| ||||||||||||  |   || || |    
T  42687136 cttccaagtgaaacaccatctccactagtcaagtatagagaagaagaattgcaaaatttaaggggagatggaacaggagagcgcaagttacatgaaagga 42687235  T
Q  198 tatatgattacgatgtctacaatgattt 225  Q
    | || |||||||||||||||||||||||    
T  42687236 tctacgattacgatgtctacaatgattt 42687263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 228
Target Start/End: Original strand, 36743886 - 36744021
Alignment:
Q  93 cataccttccaagtgaaacaccagctcctttagtgttctacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatggga 192  Q
    |||||||||||  |||||  ||||||||  ||||   ||||||||| | ||||||| | |||||||| ||||||||||| | | ||||  ||||||||||    
T  36743886 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 36743985  T
Q  193 tagaatatatgattacgatgtctacaatgatttggg 228  Q
     ||||| |||||||| ||||| ||||||||||||||    
T  36743986 cagaatctatgattatgatgtttacaatgatttggg 36744021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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