View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1127_low_9 (Length: 334)
Name: NF1127_low_9
Description: NF1127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1127_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 42983593 - 42983365
Alignment:
| Q |
12 |
atcataggagagagagggaaaacagaaccttaaaaaccgcctaacttggagtatagaatatatatttcctctcaaaaaatcnnnnnnnnnnnnngtgtta |
111 |
Q |
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| T |
42983593 |
atcaaaggagagagagggaaaacagaaccttaaaaaccgcctaacttggagtatagaatatctatttcctctcaaaaaatctttttttctttttgtgtta |
42983494 |
T |
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| Q |
112 |
tgtgagtttcctcactttactttgaatttccatttccatggagtcttttccaccttcttcaaatcctctcttccatctctatcatcctcacaacaaatca |
211 |
Q |
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| T |
42983493 |
tgtgagtttcctcactttactttgaatttccatttccatggagtcttctccaccttcttcaaatcctctcttccatctctatcatcctcacaacaaatca |
42983394 |
T |
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| Q |
212 |
aaaatgcaccatcccattttcctctttgc |
240 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42983393 |
aaaatgcaccatcccattttcctctttgc |
42983365 |
T |
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