View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_high_14 (Length: 372)
Name: NF11280A_high_14
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_high_14 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 372
Target Start/End: Complemental strand, 32898994 - 32898632
Alignment:
| Q |
10 |
aagaatatcaccaccaccgggaaaaggctgcgccgcggccgccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaaaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32898994 |
aagaatatcaccaccaccgggaaaaggctgcgccgcggcggccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaaaa |
32898895 |
T |
|
| Q |
110 |
gcagaaacaccgacattcctctgaaaccttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||| |
|
|
| T |
32898894 |
gcagaaacaccgacattcctctgaaaccttgcaaaaggatccattgttgcattcatagaaggtgaaacaagatcaaaacttccattgctgttgctgttga |
32898795 |
T |
|
| Q |
210 |
agctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagtt |
309 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32898794 |
agttgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagtt |
32898695 |
T |
|
| Q |
310 |
acacatttgaccaccgttgaatgaggcggtgctagcggcagtgtagggagatgaatcaagaag |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32898694 |
acacatttgaccaccgttgaatgaggcggtgctagcggcggtgtagggagatgaatcaagaag |
32898632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 137 - 372
Target Start/End: Complemental strand, 17415196 - 17414973
Alignment:
| Q |
137 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
236 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| ||| ||||||||||| |
|
|
| T |
17415196 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttg |
17415097 |
T |
|
| Q |
237 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | |||||||||| ||| |
|
|
| T |
17415096 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgtt------------gttggagttacacatttggtcgccgttgaatgtggc |
17415009 |
T |
|
| Q |
337 |
ggtgctagcggcagtgtagggagatgaatcaagaag |
372 |
Q |
| |
|
| |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
17415008 |
gatgctagcggcggtgtaaggagatgaatcaagaag |
17414973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 137 - 372
Target Start/End: Original strand, 20409621 - 20409844
Alignment:
| Q |
137 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
236 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| || ||||||||||| |
|
|
| T |
20409621 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttg |
20409720 |
T |
|
| Q |
237 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | |||||||||| ||| |
|
|
| T |
20409721 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgt------------tgttggagttacacatttggtcgccgttgaatgtggc |
20409808 |
T |
|
| Q |
337 |
ggtgctagcggcagtgtagggagatgaatcaagaag |
372 |
Q |
| |
|
| |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
20409809 |
gatgctagcggcggtgtaaggagatgaatcaagaag |
20409844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 137 - 372
Target Start/End: Complemental strand, 46312720 - 46312497
Alignment:
| Q |
137 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
236 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| || ||||||||||| |
|
|
| T |
46312720 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttg |
46312621 |
T |
|
| Q |
237 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | |||||||||| ||| |
|
|
| T |
46312620 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgtt------------gttggagttacacatttggtcgccgttgaatgtggc |
46312533 |
T |
|
| Q |
337 |
ggtgctagcggcagtgtagggagatgaatcaagaag |
372 |
Q |
| |
|
| |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
46312532 |
gatgctagcggcggtgtaaggagatgaatcaagaag |
46312497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 137 - 372
Target Start/End: Complemental strand, 40169283 - 40169069
Alignment:
| Q |
137 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
236 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| ||| |||||||||| |
|
|
| T |
40169283 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacattt- |
40169185 |
T |
|
| Q |
237 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| | |||||||||| ||| |
|
|
| T |
40169184 |
--------gatgttgtggagaaacaggacacgtgctcctttagatcggtgt------------tgttggagttacacatttggtcgccgttgaatgtggc |
40169105 |
T |
|
| Q |
337 |
ggtgctagcggcagtgtagggagatgaatcaagaag |
372 |
Q |
| |
|
| ||||||| || ||||| ||||||||||||||||| |
|
|
| T |
40169104 |
gatgctagcagcggtgtaaggagatgaatcaagaag |
40169069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 46482987 - 46483093
Alignment:
| Q |
159 |
cattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaa |
258 |
Q |
| |
|
||||| ||||||| ||||| |||||||| |||||||||||||||| | ||||| ||||||| ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
46482987 |
cattcgtagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtggacagagacaacatttgatgttctagatattgtggagaa |
46483086 |
T |
|
| Q |
259 |
acaggac |
265 |
Q |
| |
|
| ||||| |
|
|
| T |
46483087 |
ataggac |
46483093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 46482880 - 46482960
Alignment:
| Q |
38 |
tgcgccgcggccgccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaaaagcagaaaca |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
46482880 |
tgcgccgcggccgccgtggagaaaaagaaaggaagctggagattatcttgtagtgacctcaatctaggaaaaatagaaaca |
46482960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University