View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_high_15 (Length: 361)
Name: NF11280A_high_15
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 37574227 - 37574391
Alignment:
| Q |
16 |
atcgaaatatattatatgtatttgaatgtagttttatatcaatcgctcgagttaggttgaattataaatttcttttttagaaccgaaccaaaccgcacac |
115 |
Q |
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| T |
37574227 |
atcgaaatatattggatgtatttgaatgtagttttgtatcaatcgctcgagttaggttgaattatagtttttttttttagaactgaaccaaaccgcgcac |
37574326 |
T |
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| Q |
116 |
cacatacatatcggagaaatcaagaaataatagtatatattgcgtcaaacaaacaaaatatatag |
180 |
Q |
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| T |
37574327 |
cacatacatatcggagaaatcaagaaataatagtatatattgcgtcaaacaaacaaaatatatag |
37574391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 247 - 361
Target Start/End: Original strand, 37574464 - 37574582
Alignment:
| Q |
247 |
gtcatgtggacatatgaattgaacaaacacatgaattgagtgagcgcgtgtattagcatcgcactcttcacacgtaggggtagcta----gattaatctg |
342 |
Q |
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| T |
37574464 |
gtcatgtggacatatgaattgaacaaacacatgaattgagtgagcgcgtgtattagcattgcgctcttcacacgtaggggtagctagagtgatgaatttg |
37574563 |
T |
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| Q |
343 |
atgatgcatgaggatgagg |
361 |
Q |
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| T |
37574564 |
atgatgcatgaggatgagg |
37574582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 32971672 - 32971611
Alignment:
| Q |
16 |
atcgaaatatattatatgtatttgaatgtagttttatatcaatcgctcgagttaggttgaat |
77 |
Q |
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| T |
32971672 |
atcgaaatatattagatgtttttgaatgtagttttctatccatcgctcgagttagattgaat |
32971611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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