View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_high_18 (Length: 344)
Name: NF11280A_high_18
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 7 - 330
Target Start/End: Complemental strand, 42732765 - 42732442
Alignment:
| Q |
7 |
caaccgagtcatttcactatcactacagagaaaggaaaccaataatcaaccttcacaagtcactttctctctcgttgtggaaggcttgttgttgtatata |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42732765 |
caaccgagtcatttcactatcactacagagaaaggaaaccaataatcaaccttcacaagtcactttctctctcgttgtggaaggcttgttgttgtatata |
42732666 |
T |
|
| Q |
107 |
ctatatacaactatgttccataaatattgattatttattgatgtcatgtagtaatcagaccataataacgcatgcaatgcaacaatataagcattcccta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42732665 |
ctatatacaactatgttccataaatattgattatttattgatgtcatgtagtaatcagaccataataacgcatgcaatgcaataatataagcattcccta |
42732566 |
T |
|
| Q |
207 |
tagagaaggacaatgagtcagagcttatagtaataggttatacaagtgacaacgaagaggctctttctcaggagtaattggggcctaatggactgttcta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42732565 |
tagagaaggacaatgagtcagagcttatagtaatagattatacaagtgacaacgaagaggctctttctcaggagtaattggggcctaatggactgttcta |
42732466 |
T |
|
| Q |
307 |
ttgggtctcagcccttaatgtata |
330 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
42732465 |
ttgggtctcagcccttaatgtata |
42732442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University