View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_high_21 (Length: 329)

Name: NF11280A_high_21
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_high_21
NF11280A_high_21
[»] chr1 (19 HSPs)
chr1 (158-329)||(13244450-13244621)
chr1 (152-326)||(13080788-13080962)
chr1 (9-153)||(13244107-13244251)
chr1 (151-329)||(12963797-12963975)
chr1 (150-329)||(19279089-19279268)
chr1 (158-329)||(13271678-13271849)
chr1 (157-329)||(13129920-13130092)
chr1 (155-329)||(13086199-13086373)
chr1 (157-329)||(13094491-13094663)
chr1 (157-329)||(13070104-13070276)
chr1 (157-329)||(13204551-13204723)
chr1 (236-327)||(30368115-30368206)
chr1 (157-329)||(13101092-13101264)
chr1 (157-329)||(13161613-13161785)
chr1 (157-329)||(13007292-13007464)
chr1 (155-326)||(13065139-13065310)
chr1 (84-153)||(12963575-12963644)
chr1 (79-146)||(19278827-19278894)
chr1 (9-88)||(19278730-19278809)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 158 - 329
Target Start/End: Original strand, 13244450 - 13244621
Alignment:
Q  158 ttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatact 257  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13244450 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttcagcacaagtgcgctatcaaatctgatatact 13244549  T
Q  258 acctagtggacaccatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaaca 329  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13244550 acctagtggagaacatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatgcaaca 13244621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 152 - 326
Target Start/End: Original strand, 13080788 - 13080962
Alignment:
Q  152 aagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctga 251  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| || | ||||||||||||||||||||||||||||| ||    
T  13080788 aagagcttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttcagcacaagtgtgctatcaaatcgga 13080887  T
Q  252 tatactacctagtggacaccatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatgga 326  Q
    || ||| ||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13080888 taaacttcctagtggagaccatgttagtccaaatacaaagttaatatattctttgtatgcaatgggaaggatgga 13080962  T

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Target: chr1; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 13244107 - 13244251
Alignment:
Q  9 gagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaagatgtagatgaatctcgttatt 108  Q
    |||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13244107 gagaagaagggcaaggcagctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaagatgtagatgaatctcgttatt 13244206  T
Q  109 gcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 153  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||||    
T  13244207 gcctgctaaaagaactaatgaaggaaagattgggaaagggggaaa 13244251  T

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Target: chr1; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 151 - 329
Target Start/End: Original strand, 12963797 - 12963975
Alignment:
Q  151 aaagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctg 250  Q
    |||| |||||||||||||||||| ||||||||||| || |||||| | |||||||| | ||||||| |  ||||| | ||||||||||| || ||||| |    
T  12963797 aaagggcttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttgaacacaagtgtgcaattaaatcag 12963896  T
Q  251 atatactacctagtggacaccatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaaca 329  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12963897 atatattacctagtggagaccatgttagtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaaca 12963975  T

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Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 150 - 329
Target Start/End: Original strand, 19279089 - 19279268
Alignment:
Q  150 gaaagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatct 249  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| | ||| ||| |  ||||| | |||||||||||  | || ||     
T  19279089 gaaagagcttgataagctagtttatcttcatggagctatatgtgaagccttaaggctttatccacctgtaccatttgaacacaagtgtgcagttaattcc 19279188  T
Q  250 gatatactacctagtggacaccatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaaca 329  Q
    |||||||||||||||||| |||||||| ||| |||||||||||| ||||| |||||||||||||||||||||||||||||    
T  19279189 gatatactacctagtggagaccatgttagtctaaatacaaagttaatatactctttgtatgcaatgggaaggatggaaca 19279268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 158 - 329
Target Start/End: Complemental strand, 13271849 - 13271678
Alignment:
Q  158 ttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatact 257  Q
    ||||||||||  |||||||||||| ||| |||||||||||||| || || | ||||||| |  ||||| | |||||||||||  | || |||||||||||    
T  13271849 ttgataagctgatttaccttcatgcagctatatgtgaaaccttgagactttatcctcctataccatttgatcacaagtgtgcagttaattctgatatact 13271750  T
Q  258 acctagtggacaccatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaaca 329  Q
    ||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||    
T  13271749 acctagtggacaccatgttggtccaaacacaaagttaatatactctttgtatgcaatgggaagaatggaaca 13271678  T

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Target: chr1; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 157 - 329
Target Start/End: Complemental strand, 13130092 - 13129920
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 256  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | ||||||| |  | ||| |||| |  ||| | ||||||||||||||||    
T  13130092 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgttcaatcaaatctgatatac 13129993  T
Q  257 tacctagtggacaccatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaaca 329  Q
    ||||||||||| |||||||| ||||||||||||  ||||| || ||||||||| | |||||||||||||||||    
T  13129992 tacctagtggataccatgttagtccaaatacaactttgatttactctttgtattctatgggaaggatggaaca 13129920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 155 - 329
Target Start/End: Complemental strand, 13086373 - 13086199
Alignment:
Q  155 agcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatat 254  Q
    ||||| |||| || || |||||||||||||| ||||||||| | || ||||| | ||||||| |  ||||||||||||||||||| |||||| |||||||    
T  13086373 agcttaataaactagtgtaccttcatggagctatatgtgaagcattgaggctttatcctcctgtaccatttcagcacaagtgtgcaatcaaagctgatat 13086274  T
Q  255 actacctagtggacaccatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaaca 329  Q
    ||||||||||||| |  |||||   |||||||| ||||| ||||| |||||||||||||||||||||||| ||||    
T  13086273 actacctagtggagattatgttaaaccaaatactaagttaatatactctttgtatgcaatgggaaggatgaaaca 13086199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 157 - 329
Target Start/End: Complemental strand, 13094663 - 13094491
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 256  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | ||||||| |  | ||| |||| |  ||||| ||||||||||||||||    
T  13094663 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctgtaccttttgagcatatctgtgcaatcaaatctgatatac 13094564  T
Q  257 tacctagtggacaccatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaaca 329  Q
    ||||||||||| ||||||||  |||||||||||  || || || ||||||||| | |||||||||||||||||    
T  13094563 tacctagtggataccatgttactccaaatacaactttaatttactctttgtattctatgggaaggatggaaca 13094491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 157 - 329
Target Start/End: Original strand, 13070104 - 13070276
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 256  Q
    |||||||| || || |||||||||||||| |||||||||||||| || || | ||||||| |  | ||| |||| |  ||||| |||||||| |||||||    
T  13070104 cttgataatctagtgtaccttcatggagctatatgtgaaaccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatac 13070203  T
Q  257 tacctagtggacaccatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaaca 329  Q
    ||||||||||| | | |||| |||||||||||| |||  | || |||||||| || |||||||||||||||||    
T  13070204 tacctagtggagagcgtgttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatggaaca 13070276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 157 - 329
Target Start/End: Complemental strand, 13204723 - 13204551
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 256  Q
    ||||||||||| || |||||||||||||| ||||||||| |||| || || | ||||||| |  | ||| |||| |  ||||| |||||||| |||||||    
T  13204723 cttgataagctagtgtaccttcatggagctatatgtgaagccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatac 13204624  T
Q  257 tacctagtggacaccatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaaca 329  Q
    ||||||||||| | | |||| |||||||||||| |||  | || |||||||| || |||||||||||||||||    
T  13204623 tacctagtggagagcgtgttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatggaaca 13204551  T

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Target: chr1; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 30368115 - 30368206
Alignment:
Q  236 gtgctatcaaatctgatatactacctagtggacaccatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaa 327  Q
    |||| ||||||||||||||||||||||||||| |  ||||| |||||||||| ||||| || || ||||||||||| |||||||||||||||    
T  30368115 gtgcaatcaaatctgatatactacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaa 30368206  T

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Target: chr1; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 329
Target Start/End: Complemental strand, 13101264 - 13101092
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 256  Q
    ||||||||||| || ||||| |||||||| |||||||||||||| ||||| | ||||||| |  | ||| |||| |  ||| | |||||||| |||||||    
T  13101264 cttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtaccttttgagcatatatgttcaatcaaatccgatatac 13101165  T
Q  257 tacctagtggacaccatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaaca 329  Q
    | ||||||||| | | | || |||||||||||| |||  | || |||||||| || |||||||||||||||||    
T  13101164 ttcctagtggagagcgttttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatggaaca 13101092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 329
Target Start/End: Complemental strand, 13161785 - 13161613
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 256  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | ||| ||| |  | ||| |||| |  ||||| |||||||| |||||||    
T  13161785 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatccacctataccttttgagcatatctgtgcaatcaaatccgatatac 13161686  T
Q  257 tacctagtggacaccatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaaca 329  Q
    ||||||||||| | | | || ||||||||||||  || || || ||| ||||| | ||||| |||||||||||    
T  13161685 tacctagtggagaacgtattagtccaaatacaagtttaatgtactctatgtattctatgggcaggatggaaca 13161613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 329
Target Start/End: Complemental strand, 13007464 - 13007292
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 256  Q
    ||||||||||| || ||||| ||||||||  |||||||| || | ||||| | ||||||| |  | ||| |||| |  ||||| ||||| || |||||||    
T  13007464 cttgataagctagtgtacctccatggagctctatgtgaagccatgaggctttatcctcctgtaccttttgagcatatctgtgcaatcaattccgatatac 13007365  T
Q  257 tacctagtggacaccatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaaca 329  Q
    ||||||||||| | | |||| |||||||||||| |||  | || |||||||| || |||||||||||||||||    
T  13007364 tacctagtggagagcgtgttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatggaaca 13007292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 326
Target Start/End: Original strand, 13065139 - 13065310
Alignment:
Q  155 agcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatat 254  Q
    |||||||||| ||  ||||||| || ||||| ||||||||| |||||||||| | ||||||| |  |  |  |||| |||| ||| |||||| |||||||    
T  13065139 agcttgataaactaatttacctccacggagctatatgtgaagccttaaggctttatcctcctgtacctatcgagcaaaagtttgcaatcaaagctgatat 13065238  T
Q  255 actacctagtggacaccatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatgga 326  Q
    ||| |||||||||  ||||||  |||||||||||| | |  |||| | ||||||| ||||||||||||||||    
T  13065239 acttcctagtggagtccatgtaagtccaaatacaaggatattatactatttgtattcaatgggaaggatgga 13065310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 12963575 - 12963644
Alignment:
Q  84 gaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 153  Q
    ||||| || |||||||||| || ||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  12963575 gaagacgtggatgaatctcattcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaa 12963644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 19278827 - 19278894
Alignment:
Q  79 gaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaag 146  Q
    |||||||||| |  |||||||||| |||||||||| |||||||||||||||| ||| |||||||||||    
T  19278827 gaaatgaagacgcggatgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaag 19278894  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 19278730 - 19278809
Alignment:
Q  9 gagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaaga 88  Q
    |||| |||||||| || ||| ||||||||||||||| | |||||| ||||||||||| || | ||||||||  |||||||    
T  19278730 gagaagaagggcacggtagctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggtgatgaaga 19278809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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