View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_high_29 (Length: 256)
Name: NF11280A_high_29
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_high_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 53042768 - 53042565
Alignment:
| Q |
7 |
ggtgctgttttttccgtttaacgatttcaaacaattttccatcgatctgaaactgcattgaaaacaaaacctatttccaaatatagacattatcgttgtc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53042768 |
ggtgctgttttttccgtttaacgatttcaaacaattttccatcgatctgaaactgcattgaaaacaaaacctatttccaaatacagacattatcgttgtc |
53042669 |
T |
|
| Q |
107 |
atccgttgtctttcagctgtaacaacacatttcctatttagtaagttgctagctacattgagttagcaatgtatttgtttggggtttgattttatcatat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
53042668 |
----------tttcagctgtaacaacacatttcctatttagtaagttgctagctacattgagttagcaatgtatttgtttggggtttgattttattatat |
53042579 |
T |
|
| Q |
207 |
acacacaacaacaa |
220 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
53042578 |
acacacaacaacaa |
53042565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University