View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_high_3 (Length: 611)

Name: NF11280A_high_3
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_high_3
NF11280A_high_3
[»] chr5 (27 HSPs)
chr5 (330-611)||(30240788-30241076)
chr5 (388-607)||(29873601-29873821)
chr5 (391-607)||(29854738-29854954)
chr5 (11-201)||(30240471-30240669)
chr5 (418-605)||(30675778-30675965)
chr5 (422-605)||(30751075-30751258)
chr5 (418-605)||(30484830-30485017)
chr5 (397-607)||(30520091-30520304)
chr5 (397-607)||(30560431-30560644)
chr5 (419-607)||(30476802-30476990)
chr5 (418-605)||(30337015-30337202)
chr5 (388-607)||(30437225-30437444)
chr5 (188-334)||(30751401-30751543)
chr5 (418-605)||(30061801-30061988)
chr5 (422-605)||(30711922-30712105)
chr5 (423-607)||(30207949-30208133)
chr5 (396-607)||(30401504-30401715)
chr5 (441-607)||(17417181-17417347)
chr5 (246-334)||(30240668-30240751)
chr5 (196-298)||(30675510-30675606)
chr5 (474-607)||(30329387-30329520)
chr5 (536-607)||(29614295-29614366)
chr5 (534-607)||(29608133-29608206)
chr5 (203-238)||(30519942-30519977)
chr5 (203-238)||(30560282-30560317)
chr5 (255-292)||(29873947-29873984)
chr5 (474-538)||(17984386-17984450)
[»] chr4 (3 HSPs)
chr4 (418-599)||(20295072-20295253)
chr4 (192-331)||(20294808-20294938)
chr4 (465-607)||(52353388-52353530)
[»] chr3 (1 HSPs)
chr3 (418-607)||(25292437-25292626)
[»] chr7 (2 HSPs)
chr7 (330-607)||(26708744-26709026)
chr7 (207-238)||(26709091-26709122)
[»] chr1 (2 HSPs)
chr1 (418-610)||(7100830-7101022)
chr1 (497-574)||(7580297-7580374)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-135; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 330 - 611
Target Start/End: Original strand, 30240788 - 30241076
Alignment:
Q  330 ttattctcaaagttcttcattctgtttacttttaacactcaagtcaatctaaaaccaatttct--------tatcttttcaactctttcttttaccaaaa 421  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  30240788 ttattctcaaagttcttcattctgtttacttttaacactca-gtcaatctaaaaccaatttctcatttacttatcttttcaactctttcttttaccaaaa 30240886  T
Q  422 aatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctcaaaag 521  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30240887 aatggctgatgcgttgatcggagttgtgtttgataacttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctcaaaag 30240986  T
Q  522 ctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatggctgcaa 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30240987 ctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatggctgcaa 30241076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 388 - 607
Target Start/End: Complemental strand, 29873821 - 29873601
Alignment:
Q  388 tttcttatcttttcaactctttcttttac-caaaaaatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttg 486  Q
    ||||||||||||||||||||||  ||| | |||||||||||| | || |||||||||||||||||||| ||||||| ||||||||| ||||||||||||     
T  29873821 tttcttatcttttcaactcttttgttttcacaaaaaatggctaacgctttgctcggagttgtgtttgaaaatttgatgtctctccttcaaaatgaatttt 29873722  T
Q  487 caaccatttctggaatcaagtcaaaggctcaaaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacaga 586  Q
    | ||||||||||| ||||||||||||||| |||| || |||  |||||||||| ||||||| || ||||||||||||||||| |||||||||||||||||    
T  29873721 ctaccatttctggtatcaagtcaaaggctgaaaaactatcaaccaccttagatttgatcaaggctgttcttgaagatgctgaaaagaaacaagtcacaga 29873622  T
Q  587 ctgctctattaaggtatggct 607  Q
    | |||||||||||||||||||    
T  29873621 ccgctctattaaggtatggct 29873601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 391 - 607
Target Start/End: Complemental strand, 29854954 - 29854738
Alignment:
Q  391 cttatcttttcaactctttcttttaccaaaaaatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaac 490  Q
    ||||| ||||||||||||| ||||  ||||||||||| || || || ||||||||||||||| | ||||||| |||||||||||||| ||||||| ||||    
T  29854954 cttatattttcaactctttgttttcacaaaaaatggccgacgctttactcggagttgtgtttcagaatttgacgtctctcctacaaagtgaattttcaac 29854855  T
Q  491 catttctggaatcaagtcaaaggctcaaaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgc 590  Q
    ||||||| ||||||||||||||||| |||| || |||  |||||||||| ||||||| || ||||||||||||||||| ||||||||||||||||||  |    
T  29854854 catttctagaatcaagtcaaaggctgaaaaactatcaaccaccttagatttgatcaatgctgttcttgaagatgctgaaaagaaacaagtcacagaccac 29854755  T
Q  591 tctattaaggtatggct 607  Q
    |||||||||||||||||    
T  29854754 tctattaaggtatggct 29854738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 30240471 - 30240669
Alignment:
Q  11 atgaaatttgacatttaattaaataaatagaatgtaaaacaaattacatatagcatcataacctgtcccaaaatatacctcaaat----------gtaaa 100  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| ||||||  ||||||||| |||||||||| |||||||||||          |||||    
T  30240471 atgaaattttacatttaatcaaataaatagaatgtaaaacaaat-acatatgacatcataac-tgtcccaaaagatacctcaaatttattataaagtaaa 30240568  T
Q  101 ttttgttagtgttcttgtatgaaaacaaataaactaaatcaatttcttcccaacaattatacatgccagtagggacaccccatctcttaatggaccccga 200  Q
    |||| ||||||||| |||||||||||||| ||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30240569 ttttattagtgttcatgtatgaaaacaaagaaattaaataaaattctttccaacaattatacatgccagtagggacaccccatctcttaatggaccccga 30240668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 418 - 605
Target Start/End: Original strand, 30675778 - 30675965
Alignment:
Q  418 aaaaaatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctca 517  Q
    ||||||||||||| || ||||| |||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||    
T  30675778 aaaaaatggctgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttcaaccatttctggaatcaagtcaaaggttca 30675877  T
Q  518 aaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatgg 605  Q
    |||||| ||| ||| ||||| |   ||||| || ||||||||||||||||||||||||||| ||| |||   |||||||||| |||||    
T  30675878 aaagctatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatgg 30675965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 422 - 605
Target Start/End: Complemental strand, 30751258 - 30751075
Alignment:
Q  422 aatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctcaaaag 521  Q
    ||||||||| || ||||| |||||||||||||| ||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||    
T  30751258 aatggctgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttcaaccatttctggaattaagtcaaaggctcaaaag 30751159  T
Q  522 ctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatgg 605  Q
    || ||||||| ||||| |   ||||| || ||||||||||||||||||||||||||| ||| |||   |||||||||| |||||    
T  30751158 ctatcagacaacttagttcgcatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatgg 30751075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 418 - 605
Target Start/End: Complemental strand, 30485017 - 30484830
Alignment:
Q  418 aaaaaatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctca 517  Q
    |||||||||||   || ||||| ||||||||||| || |||||||  |||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  30485017 aaaaaatggcttgcgctttgcttggagttgtgttcgaaaatttgacatctctccttcaaaatgaattttcaaccatttctggaatcaagtcaaaggctca 30484918  T
Q  518 aaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatgg 605  Q
    |||||| ||||||| ||||| |   |||||||| ||||||||||||||||||||||||||| ||| |||   |||||||||| |||||    
T  30484917 aaagctatcagacaacttagttcacatcaaagctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatgg 30484830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 397 - 607
Target Start/End: Original strand, 30520091 - 30520304
Alignment:
Q  397 ttttcaactctttctttt---accaaaaaatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccat 493  Q
    ||||||||||||||||||   |  ||||||||||||| || || || || ||||||||||| ||| |    |||||  | ||||||||||||||||||||    
T  30520091 ttttcaactctttcttttctgaaaaaaaaatggctgaagctttacttggtgttgtgtttgaaaatctactatctcttgttcaaaatgaatttgcaaccat 30520190  T
Q  494 ttctggaatcaagtcaaaggctcaaaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctct 593  Q
    ||||||||||||||| ||||||| |||||| |||  |||||||||| ||||||| |||||||||||||||||||||||||||||| | |||||| |||||    
T  30520191 ttctggaatcaagtccaaggctctaaagctatcaaccaccttagatttgatcaaggccgttcttgaagatgctgagaagaaacaaataacagaccgctct 30520290  T
Q  594 attaaggtatggct 607  Q
    || |||||||||||    
T  30520291 ataaaggtatggct 30520304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 397 - 607
Target Start/End: Original strand, 30560431 - 30560644
Alignment:
Q  397 ttttcaactctttctttt---accaaaaaatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccat 493  Q
    ||||||||||||||||||   |  ||||||||||||| || || || || ||||||||||| ||| |    |||||  | ||||||||||||||||||||    
T  30560431 ttttcaactctttcttttctgaaaaaaaaatggctgaagctttacttggtgttgtgtttgaaaatctactatctcttgttcaaaatgaatttgcaaccat 30560530  T
Q  494 ttctggaatcaagtcaaaggctcaaaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctct 593  Q
    ||||||||||||||| ||||||| |||||| |||  |||||||||| ||||||| |||||||||||||||||||||||||||||| | |||||| |||||    
T  30560531 ttctggaatcaagtccaaggctctaaagctatcaaccaccttagatttgatcaaggccgttcttgaagatgctgagaagaaacaaataacagaccgctct 30560630  T
Q  594 attaaggtatggct 607  Q
    || |||||||||||    
T  30560631 ataaaggtatggct 30560644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 419 - 607
Target Start/End: Complemental strand, 30476990 - 30476802
Alignment:
Q  419 aaaaatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctcaa 518  Q
    ||||||||| || || ||||| |||||||| ||||| ||||||   |||||  | |||||||||||||||||||||||||||||||  ||||||||| ||    
T  30476990 aaaaatggcagaggccttgctaggagttgtatttgagaatttgttatctcttgttcaaaatgaatttgcaaccatttctggaatcacatcaaaggctgaa 30476891  T
Q  519 aagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatggct 607  Q
    ||| |||||  |||||| ||| ||||||| || |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||    
T  30476890 aagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggct 30476802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 418 - 605
Target Start/End: Original strand, 30337015 - 30337202
Alignment:
Q  418 aaaaaatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctca 517  Q
    |||||||||| || || ||||| |||||||||||||| ||||||| | ||||||  |||||||||||| |||||||||||||||| ||||||||||||||    
T  30337015 aaaaaatggccgacgctttgcttggagttgtgtttgaaaatttgacggctctccatcaaaatgaattttcaaccatttctggaattaagtcaaaggctca 30337114  T
Q  518 aaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatgg 605  Q
    |||||| ||||||| ||||| |   ||||| || ||||||||||||||||||||||||||| ||| |||   |||||||||| |||||    
T  30337115 aaagctatcagacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatgg 30337202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 388 - 607
Target Start/End: Complemental strand, 30437444 - 30437225
Alignment:
Q  388 tttcttatcttttcaactctttcttttaccaaaaaatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgc 487  Q
    |||||||||||||||||||||| ||||  ||||||||||||||| | || || |||||||||||||| |||||||  ||||| || |||||||||||| |    
T  30437444 tttcttatcttttcaactcttttttttctcaaaaaatggctgatccctttcttggagttgtgtttgagaatttgatatctctgcttcaaaatgaattttc 30437345  T
Q  488 aaccatttctggaatcaagtcaaaggctcaaaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagac 587  Q
     || |||||||||||||||||||||||| |||| || |||  |||||||| |   ||||| || ||||||||||||||||| |||| |||||||| ||||    
T  30437344 tactatttctggaatcaagtcaaaggctgaaaacctatcaaccaccttagttgacatcaaggctgttcttgaagatgctgaaaagagacaagtcaaagac 30437245  T
Q  588 tgctctattaaggtatggct 607  Q
      ||  ||||||||||||||    
T  30437244 aacttcattaaggtatggct 30437225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 188 - 334
Target Start/End: Complemental strand, 30751543 - 30751401
Alignment:
Q  188 taatggaccccgataataaatttgtgattgaaaatgtgtgtcctacaaacagtacccaatcaataataatggaaccttgcaagacagttgcataaatttg 287  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||   || ||||||||||||||||||||||||||  |||||||||||| ||    
T  30751543 taatggaccccgatgataaatttgtgattgaaaatgtgcgtcctacaaaca---cctaatcaataataatggaaccttgcaagcaagttgcataaatctg 30751447  T
Q  288 tggttaaaaatacgccacacctacttgaatgtttgctcacaattatt 334  Q
    ||||| ||||||||||  || ||| ||||||||||||||||||||||    
T  30751446 tggttgaaaatacgcc-tacgtacgtgaatgtttgctcacaattatt 30751401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 418 - 605
Target Start/End: Complemental strand, 30061988 - 30061801
Alignment:
Q  418 aaaaaatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctca 517  Q
    |||||||||| || || ||||| |||||||||||||| ||||||| | ||||||| |||||||||||| |||||||||||||||| |||||||||| |||    
T  30061988 aaaaaatggccgacgctttgcttggagttgtgtttgaaaatttgacggctctccttcaaaatgaattttcaaccatttctggaattaagtcaaaggttca 30061889  T
Q  518 aaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatgg 605  Q
    |||||| ||| ||| ||||| |   ||||| || ||||||||||||||||||||||||||| ||| |||   |||||||||| |||||    
T  30061888 aaagctatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatgg 30061801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 422 - 605
Target Start/End: Original strand, 30711922 - 30712105
Alignment:
Q  422 aatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctcaaaag 521  Q
    ||||||||| || ||||| ||| |||| ||||| || |||| ||||||||| |||||||||||| | ||||||||||||||||| ||||||| |||||||    
T  30711922 aatggctgacgctttgcttggatttgtttttgaaaacttgacgtctctccttcaaaatgaattttctaccatttctggaatcaaatcaaaggttcaaaag 30712021  T
Q  522 ctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatgg 605  Q
    || ||||||| ||||| |   ||||| || ||||||||||||||||||||||||||| ||| |||   |||||||||| |||||    
T  30712022 ctatcagacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatgg 30712105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 423 - 607
Target Start/End: Complemental strand, 30208133 - 30207949
Alignment:
Q  423 atggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctcaaaagc 522  Q
    |||||||| || || || |||||||||||  | ||||||||||||||  | ||||||||||| || |||||||||||||||||||| |||||||| ||||    
T  30208133 atggctgacgccttacttggagttgtgttacagaatttgaagtctcttgttcaaaatgaattggccaccatttctggaatcaagtccaaggctcagaagc 30208034  T
Q  523 tgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatggct 607  Q
    | |||  |||||||||| || |||| || |||||||||||||||||| |||| |||||||   |  ||||||| |||||||||||    
T  30208033 tttcaaccaccttagatttggtcaacgctgttcttgaagatgctgagcagaagcaagtcatcaatcgctctataaaggtatggct 30207949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 396 - 607
Target Start/End: Complemental strand, 30401715 - 30401504
Alignment:
Q  396 cttttcaactctttcttttaccaaaaaatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccattt 495  Q
    |||||||||||||||||||   |||||||||| || || || ||  ||| || |||||| ||  |||| ||||||||||||| ||||||| | |||||||    
T  30401715 cttttcaactctttcttttctaaaaaaatggccgaagctttacttagagctgcgtttgagaaagtgaattctctcctacaaagtgaattttctaccattt 30401616  T
Q  496 ctggaatcaagtcaaaggctcaaaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctat 595  Q
    |||||||||||||||||||  |||| || |||  | ||||| ||   ||| | || ||||||| |||||||||||||| |||||||| |||| ||| |||    
T  30401615 ctggaatcaagtcaaaggccaaaaacctatcaacctccttaaatcacatcgaggctgttcttgtagatgctgagaagagacaagtcaaagacagctatat 30401516  T
Q  596 taaggtatggct 607  Q
    ||||||||||||    
T  30401515 taaggtatggct 30401504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 441 - 607
Target Start/End: Original strand, 17417181 - 17417347
Alignment:
Q  441 ggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctcaaaagctgtcagacaccttagata 540  Q
    |||||||||||||| ||||||   |||||  | ||||||||| ||||||||| || |||||| ||||||||||   ||||||| |||  |||||| |||     
T  17417181 ggagttgtgtttgagaatttgttatctctggttcaaaatgaaattgcaaccacttttggaattaagtcaaaggtcgaaaagctatcaaccaccttggatc 17417280  T
Q  541 tgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatggct 607  Q
    ||||||| || |||||||||||||||||| | ||||||||||||||  ||||||  |||||||||||    
T  17417281 tgatcaaggctgttcttgaagatgctgagcataaacaagtcacagatcgctctaacaaggtatggct 17417347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 246 - 334
Target Start/End: Original strand, 30240668 - 30240751
Alignment:
Q  246 atcaataataatggaaccttgcaagacagttgcataaatttgtggttaaaaatacgccacacctacttgaatgtttgctcacaattatt 334  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||| |     ||||||||||||||||||||||||||||    
T  30240668 atcaataataatggaaccttgcaagcaagttgcataaatttgtggttaaaaatatg-----cctacttgaatgtttgctcacaattatt 30240751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 30675510 - 30675606
Alignment:
Q  196 cccgataataaatttgtgattgaaaatgtgtgtcctacaaacagtacccaatcaataataatggaaccttgcaagacagttgcataaatttgtggttaaa 295  Q
    |||||||| |||||||||||||||||||||||||||| ||||   ||||||||   |||||||||||||||||||  ||||||||||| |||||||| ||    
T  30675510 cccgataacaaatttgtgattgaaaatgtgtgtcctagaaac---acccaatc---aataatggaaccttgcaagcaagttgcataaacttgtggttgaa 30675603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 474 - 607
Target Start/End: Original strand, 30329387 - 30329520
Alignment:
Q  474 caaaatgaatttgcaaccatttctggaatcaagtcaaaggctcaaaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaaga 573  Q
    |||| ||||| | ||||||||||  |||||||||  || ||||||||||| |||  |||||||||| | ||||| |  ||||||||||||| |||| | |    
T  30329387 caaagtgaatgttcaaccatttcctgaatcaagtttaatgctcaaaagctatcaaccaccttagatcttatcaaggttgttcttgaagatgttgagcata 30329486  T
Q  574 aacaagtcacagactgctctattaaggtatggct 607  Q
    | |||||| ||||| ||||||||||| |||||||    
T  30329487 agcaagtctcagaccgctctattaagatatggct 30329520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 536 - 607
Target Start/End: Original strand, 29614295 - 29614366
Alignment:
Q  536 agatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatggct 607  Q
    |||||| ||||| |||||||||||||||| |||| | |||||  |||||||| ||||||| |||||||||||    
T  29614295 agatataatcaaggccgttcttgaagatgttgagcacaaacatatcacagacggctctataaaggtatggct 29614366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 29608133 - 29608206
Alignment:
Q  534 ttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatggct 607  Q
    |||||||| ||||| ||| |||||||||||||| || | |||||| |||||||  ||||||| |||||||||||    
T  29608133 ttagatataatcaaggcccttcttgaagatgctcagcacaaacaaatcacagatggctctataaaggtatggct 29608206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 30519942 - 30519977
Alignment:
Q  203 ataaatttgtgattgaaaatgtgtgtcctacaaaca 238  Q
    |||||||||||||||||||| |||||||||||||||    
T  30519942 ataaatttgtgattgaaaatctgtgtcctacaaaca 30519977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 30560282 - 30560317
Alignment:
Q  203 ataaatttgtgattgaaaatgtgtgtcctacaaaca 238  Q
    |||||||||||||||||||| |||||||||||||||    
T  30560282 ataaatttgtgattgaaaatctgtgtcctacaaaca 30560317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 29873984 - 29873947
Alignment:
Q  255 aatggaaccttgcaagacagttgcataaatttgtggtt 292  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  29873984 aatggaaccttgcaagcaagttgcataaatttgtggtt 29873947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 538
Target Start/End: Complemental strand, 17984450 - 17984386
Alignment:
Q  474 caaaatgaatttgcaaccatttctggaatcaagtcaaaggctcaaaagctgtcagacaccttaga 538  Q
    |||||||||||||||||  | |||| |||||||||||||||| |||| || |||  |||||||||    
T  17984450 caaaatgaatttgcaactctatctgcaatcaagtcaaaggctgaaaaactatcaaccaccttaga 17984386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 418 - 599
Target Start/End: Original strand, 20295072 - 20295253
Alignment:
Q  418 aaaaaatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctca 517  Q
    |||||||||| || || ||||| |||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||     
T  20295072 aaaaaatggccgacgctttgcttggagttgtgtctgaaaatttgacgtctctccttcaaaatgaatttgcaaccatttctggaatcaggtcaaaggctcg 20295171  T
Q  518 aaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaag 599  Q
    |||||| ||||||| ||||| |   ||||| || ||||||||||||||||||||||||||| ||| |||   ||||||||||    
T  20295172 aaagctatcagacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaag 20295253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 192 - 331
Target Start/End: Original strand, 20294808 - 20294938
Alignment:
Q  192 ggaccccgataataaatttgtgattgaaaatgtgtgtcctacaaacagtacccaatcaataataatggaaccttgcaagacagttgcataaatttgtggt 291  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||   |||||||| ||||||||||||| | |||||  |||||||||||||||||||    
T  20294808 ggaccacgataataaattcgtgattgaaaatgtgtgtcctacaaac---acccaatcgataataatggaacgtggcaagcaagttgcataaatttgtggt 20294904  T
Q  292 taaaaatacgccacacctacttgaatgtttgctcacaatt 331  Q
    | ||||||||      |||| |||||||||||||||||||    
T  20294905 tgaaaatacg------ctacgtgaatgtttgctcacaatt 20294938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 465 - 607
Target Start/End: Complemental strand, 52353530 - 52353388
Alignment:
Q  465 tctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctcaaaagctgtcagacaccttagatatgatcaaagccgttcttgaagatg 564  Q
    ||||| || |||||||||||| | ||| | |||  |||||||||||| ||| |||| |||||| |||| |||||| | ||||| || |||||||||||||    
T  52353530 tctctacttcaaaatgaattttccaccgtatcttcaatcaagtcaaaagctgaaaacctgtcaaacacgttagatctcatcaaggcagttcttgaagatg 52353431  T
Q  565 ctgagaagaaacaagtcacagactgctctattaaggtatggct 607  Q
    ||||| ||||||||||||||||| |||||||||| ||||||||    
T  52353430 ctgagcagaaacaagtcacagaccgctctattaaagtatggct 52353388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 418 - 607
Target Start/End: Original strand, 25292437 - 25292626
Alignment:
Q  418 aaaaaatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctca 517  Q
    |||||||||| || || || || |||||||| ||||| ||| ||  ||| || || |||||||||||||||||||||||| ||||||||||||| ||| |    
T  25292437 aaaaaatggcggacgcattacttggagttgtatttgagaatatgttgtccctgcttcaaaatgaatttgcaaccatttctagaatcaagtcaaaagctga 25292536  T
Q  518 aaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatggct 607  Q
    |||||| |||  |||||| ||| ||||  | || |||||||||||||||||| ||||||||||||||||  |||||||||||||||||||    
T  25292537 aaagctatcaatcaccttggatctgatataggctgttcttgaagatgctgagcagaaacaagtcacagatcgctctattaaggtatggct 25292626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 330 - 607
Target Start/End: Complemental strand, 26709026 - 26708744
Alignment:
Q  330 ttattctcaaagttcttcattctgtttacttttaacactcaagtcaatctaaaaccaatttcttatctt--------ttcaactctttcttttaccaaaa 421  Q
    |||||||||||||||||||||||||||||||| |||||||   ||| |||||| ||||||| | |||||        ||| |||||||| |||  ||||     
T  26709026 ttattctcaaagttcttcattctgtttacttt-aacactcgt-tcactctaaa-ccaatttatcatcttgttatattttcgactctttcctttctcaaag 26708930  T
Q  422 aatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctcaaaag 521  Q
    |||||| ||| | || || ||||||||||| || ||||||| |||||| || |||| ||||||| | ||||||| ||||||||||||||||||| ||||     
T  26708929 aatggccgatccctttcttggagttgtgttcgagaatttgatgtctctgcttcaaattgaattttctaccatttatggaatcaagtcaaaggctgaaaac 26708830  T
Q  522 ctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatggct 607  Q
    || |||  |||||||| |   || |  ||||||||||||||||||||||||| |||||||||||||  || |||||||||||||||    
T  26708829 ctatcaaccaccttagttgacattagggccgttcttgaagatgctgagaagagacaagtcacagacaactttattaaggtatggct 26708744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 238
Target Start/End: Complemental strand, 26709122 - 26709091
Alignment:
Q  207 atttgtgattgaaaatgtgtgtcctacaaaca 238  Q
    ||||||||||||||||||||||||||||||||    
T  26709122 atttgtgattgaaaatgtgtgtcctacaaaca 26709091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 610
Target Start/End: Complemental strand, 7101022 - 7100830
Alignment:
Q  418 aaaaaatggctgatgcgttgctcggagttgtgtttgataatttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctca 517  Q
    |||||||| ||||||| ||||| |  ||||||||||| ||  |||  ||||| ||  |||| |||||||||||  | ||||||||||||||||||||| |    
T  7101022 aaaaaatgactgatgccttgcttgatgttgtgtttgagaacctgacatctcttcttaaaaacgaatttgcaactctatctggaatcaagtcaaaggctga 7100923  T
Q  518 aaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatggctgca 610  Q
    ||| || |||  |||||||||  | || || || ||||||||||| ||||| ||||| ||| | |||||| |||||||| |  ||||||||||    
T  7100922 aaaactatcaaccaccttagaacttattaaggctgttcttgaagacgctgaaaagaagcaattaacagaccgctctattcaaatatggctgca 7100830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 7580297 - 7580374
Alignment:
Q  497 tggaatcaagtcaaaggctcaaaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaa 574  Q
    ||||||||||||||||||||||||||| |||   ||||||||  ||||||| || |||||| |||| ||||| |||||    
T  7580297 tggaatcaagtcaaaggctcaaaagctatcaagaaccttagaactgatcaaggctgttcttcaagacgctgaaaagaa 7580374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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