View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_high_31 (Length: 246)

Name: NF11280A_high_31
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_high_31
NF11280A_high_31
[»] chr7 (8 HSPs)
chr7 (39-235)||(26617737-26617933)
chr7 (90-230)||(39865471-39865611)
chr7 (39-230)||(33190303-33190494)
chr7 (39-166)||(14719370-14719501)
chr7 (39-190)||(7578536-7578687)
chr7 (141-222)||(14719287-14719367)
chr7 (142-203)||(37479556-37479617)
chr7 (39-157)||(35339023-35339141)
[»] chr4 (16 HSPs)
chr4 (39-223)||(52311220-52311404)
chr4 (63-230)||(54687660-54687826)
chr4 (69-214)||(20275938-20276082)
chr4 (39-199)||(5350929-5351089)
chr4 (69-230)||(26997226-26997387)
chr4 (63-230)||(54678540-54678709)
chr4 (42-227)||(17365674-17365858)
chr4 (69-230)||(26992029-26992193)
chr4 (139-230)||(6408036-6408126)
chr4 (140-226)||(22746635-22746721)
chr4 (39-201)||(27360193-27360354)
chr4 (39-230)||(12746524-12746715)
chr4 (177-230)||(14000179-14000230)
chr4 (42-164)||(18902113-18902234)
chr4 (177-228)||(13994875-13994924)
chr4 (109-165)||(20355099-20355155)
[»] chr5 (8 HSPs)
chr5 (39-230)||(16633256-16633446)
chr5 (69-230)||(19779955-19780116)
chr5 (69-223)||(19479453-19479607)
chr5 (39-166)||(17604690-17604821)
chr5 (69-230)||(19783203-19783363)
chr5 (141-203)||(17604824-17604886)
chr5 (39-82)||(21575046-21575089)
chr5 (39-131)||(35105030-35105122)
[»] chr1 (6 HSPs)
chr1 (62-235)||(40274356-40274530)
chr1 (69-230)||(40279150-40279311)
chr1 (60-230)||(29530120-29530291)
chr1 (60-224)||(29547775-29547940)
chr1 (40-203)||(28201654-28201817)
chr1 (108-190)||(27417427-27417509)
[»] chr3 (7 HSPs)
chr3 (117-231)||(8832532-8832646)
chr3 (105-230)||(39875817-39875940)
chr3 (118-230)||(44126711-44126823)
chr3 (39-161)||(21587185-21587306)
chr3 (179-230)||(13921708-13921757)
chr3 (39-155)||(20458819-20458933)
chr3 (39-112)||(20463226-20463299)
[»] chr2 (3 HSPs)
chr2 (39-203)||(19912279-19912443)
chr2 (39-116)||(34111054-34111131)
chr2 (43-165)||(45276354-45276475)
[»] chr8 (6 HSPs)
chr8 (140-226)||(17909890-17909977)
chr8 (172-218)||(10739137-10739183)
chr8 (172-226)||(15007178-15007231)
chr8 (176-230)||(36911929-36911983)
chr8 (139-220)||(10734068-10734149)
chr8 (92-216)||(12145639-12145764)
[»] chr6 (1 HSPs)
chr6 (179-230)||(23599935-23599986)
[»] scaffold0248 (1 HSPs)
scaffold0248 (177-230)||(16258-16311)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 26617933 - 26617737
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617933 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 26617834  T
Q  139 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctctgat 235  Q
    |||  ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  26617833 ttgaatcctataaatagggctcatattgaattgtaaagacacacttgtgaagagaataatacaaagtgttttcatcttcttcttcctcttctttgat 26617737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 90 - 230
Target Start/End: Original strand, 39865471 - 39865611
Alignment:
Q  90 agtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaa 189  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| | |||  |||||||||||  ||||    
T  39865471 agtgaatagttagtggaccttaattgtcttgatcactcacttactcatcttgtgtactataaatagggctcatatcgtattgcaaagacacactcttgaa 39865570  T
Q  190 gagaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  39865571 gagaataatacaaagtgctttcatcttctccttcctcttct 39865611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 39 - 230
Target Start/End: Complemental strand, 33190494 - 33190303
Alignment:
Q  39 ttagtggatttccatcctta-gtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcat 137  Q
    ||||||||| | |||||||| ||||||||| |||||||||   |||||  | |||||||||||| ||||||||| ||  |||||||||||||||| ||||    
T  33190494 ttagtggatgtacatccttaagtctttcaccttcctataatttccattggtaagtgaatagttactggaccttagttgccttgatcactcacttactcat 33190395  T
Q  138 cttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    |||||||  ||||| |||| ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33190394 cttgtgtattataa-taggtctcatattgtattgcaaagacacacttgtgaagagaataatacaaagtgctttcatcttctccttcctcttct 33190303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 14719501 - 14719370
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaata----gttagtggaccttaattatcttgatcactcacttatt 134  Q
    ||||||||| ||| ||||||||||| ||| |||||||||||||||||| ||||||||||    ||||||||||||||||||| |||||||||||  ||||    
T  14719501 ttagtggatgtccgtccttagtcttccaccttcctataacccccattagtgagtgaatatatagttagtggaccttaattattttgatcactcagctatt 14719402  T
Q  135 catcttgtgtcctataaataggactcatattg 166  Q
    ||| |||| || ||||||||||||||||||||    
T  14719401 cattttgtatcttataaataggactcatattg 14719370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 7578536 - 7578687
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||| ||||||||||||||| ||| |||| ||||  ||||| | ||| || || || ||||| |||||||||  ||||||| ||||||  | ||     
T  7578536 ttagtggatgtccatccttagtcttccaccttcccataagtcccataagtgaatggatggtcagtggtccttaattactttgatcattcacttgcttata 7578635  T
Q  139 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaag 190  Q
    |||| ||||||||||||||||||||||  | | |||||||||||||| ||||    
T  7578636 ttgtatcctataaataggactcatattatagtataaagacacacttgagaag 7578687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 14719367 - 14719287
Alignment:
Q  141 gtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttctt 222  Q
    |||||||||||||||| ||||||||| | | ||||  ||||||||||||||||||||||||||  |||||||||||||||||    
T  14719367 gtgtcctataaatagggctcatattgtagtgtaaatgcacacttgtgaagagaataatacaaa-agctttcatcttcttctt 14719287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 37479617 - 37479556
Alignment:
Q  142 tgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaa 203  Q
    |||||||||||||||||  |||||| | | |||||| ||| |||||||||||||||||||||    
T  37479617 tgtcctataaataggacctatattgcaatgtaaagaaacatttgtgaagagaataatacaaa 37479556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 35339141 - 35339023
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||| |||||| |||||||| ||| |||||||||| ||||| | ||| || || |||| ||| |||||||||  |||||   |||| |  ||||     
T  35339141 ttagtggatgtccatcattagtcttccaccttcctataactcccataagtgaatggatggttaatggtccttaattactttgatatttcacatgctcata 35339042  T
Q  139 ttgtgtcctataaatagga 157  Q
    |||| ||||||||||||||    
T  35339041 ttgtatcctataaatagga 35339023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 39 - 223
Target Start/End: Complemental strand, 52311404 - 52311220
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    |||||| || ||||||| ||||||| ||| ||||||||||||| |||  |||||||||||||||||||||||||||   ||||||||||||||| |||||    
T  52311404 ttagtgaatgtccatccctagtcttccaccttcctataacccctattggtgagtgaatagttagtggaccttaatttctttgatcactcacttagtcatc 52311305  T
Q  139 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttc 223  Q
    ||||||||||||||||||| |||||||| | | |||||||||| ||||||||||||||||||||| || ||||||| ||||||||    
T  52311304 ttgtgtcctataaataggattcatattgcagtgtaaagacacatttgtgaagagaataatacaaaatgttttcatcatcttcttc 52311220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 63 - 230
Target Start/End: Complemental strand, 54687826 - 54687660
Alignment:
Q  63 ttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcat 162  Q
    ||||||||||||||||||| |||| | |||||||| |||| |||||| |||| ||||||||||| ||||| ||||||||| | |||||||||||  ||||    
T  54687826 ttcactttcctataacccc-attagtaagtgaataattaggggacctcaattttcttgatcacttacttactcatcttgtatactataaatagggttcat 54687728  T
Q  163 attgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    |||| ||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  54687727 attgtattataaagatacacttgtgaagagaataatacaaagtgatttcatcttctccttcctcttct 54687660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 69 - 214
Target Start/End: Original strand, 20275938 - 20276082
Alignment:
Q  69 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 168  Q
    ||||||||||  |||||| | ||||||||||||||||||||||| |  |||||||||||||||| ||||||| ||| ||||||||||||||||||||| |    
T  20275938 ttcctataacttccattagtaagtgaatagttagtggaccttaactgccttgatcactcacttactcatcttatgtactataaataggactcatattgta 20276037  T
Q  169 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatc 214  Q
    || ||||||||||| |||||| |||||||||||||| |||||||||    
T  20276038 ttgtaaagacacacatgtgaacagaataatacaaag-gctttcatc 20276082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 5350929 - 5351089
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||| ||||||||||||||| ||| ||||||||| | ||||||  |||||||||||||| ||||||||||||| |||||| | |||||| ||||     
T  5350929 ttagtggatgtccatccttagtcttccaccttcctataatctccattagcgagtgaatagttagcggaccttaattattttgatcgc-cacttactcatt 5351027  T
Q  139 ttgtgtcctataaataggactcatattgaatt-ctaaagacacacttgtgaagagaataata 199  Q
    |||||||||||||||||||||||||||  |||   ||||||||||||||||| |||||||||    
T  5351028 ttgtgtcctataaataggactcatattttattgaaaaagacacacttgtgaatagaataata 5351089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 26997226 - 26997387
Alignment:
Q  69 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 168  Q
    |||||||||| | ||||| | |||||||||| |||| ||||||||    |||| |||| ||||| ||||||||||| ||||||||||||||||||||  |    
T  26997226 ttcctataactctcattagtaagtgaatagtcagtgaaccttaatagctttgaacactaacttactcatcttgtgtactataaataggactcatattata 26997325  T
Q  169 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    ||  ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  26997326 ttgcaaagacatacttgtgaagagaataatacaaagtgctttcatcttctcctttctcttct 26997387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 230
Target Start/End: Complemental strand, 54678709 - 54678540
Alignment:
Q  63 ttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactc--acttattcatcttgtgtcctataaataggactc 160  Q
    ||||| |||||||||||||| ||| | ||||||||||| |||||||||||||   |||||||| |  ||||| |||||||||||  ||||||||||||||    
T  54678709 ttcaccttcctataacccccgttattaagtgaatagttggtggaccttaatttcattgatcacacttacttactcatcttgtgtattataaataggactc 54678610  T
Q  161 atattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    |||||  ||| |||||| ||  ||||||||||||||||| |||||| ||||||||||| |||||||||||    
T  54678609 atattatattgtaaagatacgtttgtgaagagaataataaaaagtgttttcatcttctccttcctcttct 54678540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 17365674 - 17365858
Alignment:
Q  42 gtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttg 141  Q
    |||||| | ||||||||||||| || |||| |||||||  ||||| |||||||||||||||||||||||||||   ||||||||||||||| ||||||||    
T  17365674 gtggatgttcatccttagtcttccattttcttataaccttcattagtgagtgaatagttagtggaccttaatttctttgatcactcacttactcatcttg 17365773  T
Q  142 tgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctct 227  Q
    ||||||||||||| | ||| ||||  | | |||||| ||  ||||||| | ||||||||||| || ||||| | ||||||||||||    
T  17365774 tgtcctataaataaggctc-tattatagtgtaaagaaacctttgtgaacaaaataatacaaaatgttttcaccatcttcttcctct 17365858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 26992029 - 26992193
Alignment:
Q  69 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 168  Q
    |||||||||  | ||||| | |||||||||||||||||||||||||  |||||||||| |||||||||||  |||| ||||||||||| ||||||||  |    
T  26992029 ttcctataaatctcattagtaagtgaatagttagtggaccttaattgccttgatcactaacttattcatcccgtgtactataaatagggctcatattata 26992128  T
Q  169 ttctaaagacacacttgtgaagag---aataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    ||  ||||| | ||||||||||||   ||||||||||||| ||||||||||||  ||||||||||    
T  26992129 ttgcaaagatatacttgtgaagagaataataatacaaagtactttcatcttctctttcctcttct 26992193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 6408036 - 6408126
Alignment:
Q  139 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    ||||||||||||||||||||  |||||| |   ||||| |||||||||||||||||||||||||| | ||||||||||||||||| ||||||    
T  6408036 ttgtgtcctataaataggacctatattgcaaagtaaaggcacacttgtgaagagaataatacaaaat-ctttcatcttcttcttcttcttct 6408126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 22746635 - 22746721
Alignment:
Q  140 tgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctc 226  Q
    |||||||||||||||||||  | |||  | | ||| ||||| |||||||||||||||||||||||| |||||||||||||| |||||    
T  22746635 tgtgtcctataaataggacctacattacaatgtaatgacacccttgtgaagagaataatacaaagtactttcatcttcttcctcctc 22746721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 201
Target Start/End: Original strand, 27360193 - 27360354
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||| | ||||  ||||||| ||| |||||||||| || || ||||| |  || |||||||| |||||||||  ||||||| |||||| |||||     
T  27360193 ttagtggatgttcatcagtagtcttccaccttcctataactcc-ataaatgaatagatggttagtggtccttaattactttgatcattcacttgttcata 27360291  T
Q  139 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataataca 201  Q
    |||| ||||||||||||||||  ||||  | | ||||||||| |||||||| | |||||||||    
T  27360292 ttgtatcctataaataggacttgtattatagtgtaaagacacgcttgtgaaaaaaataataca 27360354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 230
Target Start/End: Complemental strand, 12746715 - 12746524
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||| |||||||| | |||| ||| ||||||||||| | |||| ||| || ||| ||| ||| ||||||| |  ||||||| ||||||  ||||     
T  12746715 ttagtggatgtccatcctcaatcttccaccttcctataaccactattagtgaatgtatacttaatggtccttaatgactttgatcattcacttgctcat- 12746617  T
Q  139 ttgtgtcctataaataggactcatattgaattctaaa-gacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    ||| ||||||||||||| ||  |||||  | | | || ||||||||| |||| ||||||||||||  | |||||||||||||| |||||||||    
T  12746616 ttgcgtcctataaatagaacctatattataatgtgaatgacacacttatgaaaagaataatacaatatactttcatcttcttcctcctcttct 12746524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 14000179 - 14000230
Alignment:
Q  177 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    ||||||||||||||||||||| |||||  ||||||||| |||||||||||||||    
T  14000179 acacacttgtgaagagaataacacaaa--gctttcatcatcttcttcctcttct 14000230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 164
Target Start/End: Complemental strand, 18902234 - 18902113
Alignment:
Q  42 gtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttg 141  Q
    |||||| | |||||||| |||||||| ||||||||||| |||||| ||| || ||  ||| ||| |||||||| | ||||||  ||||||  |||| |||    
T  18902234 gtggatgttcatccttaatctttcaccttcctataacctccattagtgaatggatgcttaatggtccttaattgttttgatctttcacttgctcat-ttg 18902136  T
Q  142 tgtcctataaataggactcatat 164  Q
    ||||||||||||  |||||||||    
T  18902135 tgtcctataaatctgactcatat 18902113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 13994875 - 13994924
Alignment:
Q  177 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctctt 228  Q
    ||||||||||||||||||||| |||||  ||||||||| |||||||||||||    
T  13994875 acacacttgtgaagagaataacacaaa--gctttcatcatcttcttcctctt 13994924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 20355155 - 20355099
Alignment:
Q  109 ttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatatt 165  Q
    |||||||  ||||||| ||| || ||||| |||| ||||||||||||||||||||||    
T  20355155 ttaattactttgatcattcagttgttcatattgtatcctataaataggactcatatt 20355099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 39 - 230
Target Start/End: Complemental strand, 16633446 - 16633256
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||| ||||  |||||||||||||||||||||||||||  ||||||| ||||||| ||| |    
T  16633446 ttagtggatgtccatccttagtcttccaccttcctataacccc-attagcgagtgaatagttagtggaccttaattactttgatcattcacttactcaac 16633348  T
Q  139 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    |||||||||||||||||| ||||||||| |||  |||||||| |||||||||||||||||| |||  | ||||||| || ||||| ||||||    
T  16633347 ttgtgtcctataaatagggctcatattgtattgcaaagacacgcttgtgaagagaataatataaaaggttttcatcatcatcttcttcttct 16633256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 69 - 230
Target Start/End: Complemental strand, 19780116 - 19779955
Alignment:
Q  69 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 168  Q
    |||||||||| | ||||| | |||||||||||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||| ||||||||| |    
T  19780116 ttcctataactctcattagtaagtgaatagttagtggaccttaattaccttgatcactcacttactcgtcttgtgtactataaatagggctcatattgta 19780017  T
Q  169 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    ||  |||||||||||  ||||||||||||||||||||||||| |||||||  ||||||||||    
T  19780016 ttacaaagacacactcttgaagagaataatacaaagtgcttttatcttctcattcctcttct 19779955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 19479607 - 19479453
Alignment:
Q  69 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 168  Q
    |||||||||| | ||||| | |||||||||||||||||||||||||  ||||||||||| |||| ||||||||||| ||||||||||| || |||||| |    
T  19479607 ttcctataactctcattagtaagtgaatagttagtggaccttaattgccttgatcactcgcttactcatcttgtgtactataaatagggcttatattgta 19479508  T
Q  169 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttc 223  Q
    || ||||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  19479507 ttgtaaagacacacttataaagagaataatacaaagttctttcatcttcttcttc 19479453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 17604690 - 17604821
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaata----gttagtggaccttaattatcttgatcactcacttatt 134  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||    ||||||||||||||||||| |||||||||||  ||||    
T  17604690 ttagtggatgtccatccttagtcttccaccttcctataacccccattagtgagtgaatatatagttagtggaccttaattattttgatcactcagctatt 17604789  T
Q  135 catcttgtgtcctataaataggactcatattg 166  Q
    ||| |||| || ||||||||||||||||||||    
T  17604790 cattttgtatcttataaataggactcatattg 17604821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 69 - 230
Target Start/End: Complemental strand, 19783363 - 19783203
Alignment:
Q  69 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 168  Q
    |||||||||| | ||||| | ||||||||||||||||| |||||||   || |||||||||||| ||||||||||| ||||||||||  ||||||||| |    
T  19783363 ttcctataactctcattagtaagtgaatagttagtggaacttaattgctttcatcactcacttactcatcttgtgtactataaatagtgctcatattgta 19783264  T
Q  169 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    | | |||||||||||  ||||||||||||||||||||||||| ||||||| ||| |||||||    
T  19783263 tgc-aaagacacactcttgaagagaataatacaaagtgcttttatcttctcctttctcttct 19783203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 17604824 - 17604886
Alignment:
Q  141 gtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaa 203  Q
    |||||||||||||||| ||||||||| | | ||||  ||||||||||||||||||||||||||    
T  17604824 gtgtcctataaatagggctcatattgtagtgtaaatgcacacttgtgaagagaataatacaaa 17604886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 21575089 - 21575046
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataaccccc 82  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||    
T  21575089 ttagtggatgtccatccttagtcttccaccttcctataaccccc 21575046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 35105030 - 35105122
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcactt 131  Q
    ||||||||| ||||||||||||||| ||| || | ||||| ||||| | ||| || || |||||||  |||||||||  ||||||| ||||||    
T  35105030 ttagtggatgtccatccttagtcttacaccttgcaataactcccataagtgaatggatggttagtgatccttaattactttgatcattcactt 35105122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 62 - 235
Target Start/End: Complemental strand, 40274530 - 40274356
Alignment:
Q  62 tttcactttcctataacccccattaatgagtgaa-tagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactc 160  Q
    |||||| ||| |||||| ||||||| | |||||| |||||||||||| ||||||  |||||||||||||||| |||||||||||  |||||||||| ||     
T  40274530 tttcaccttcttataactcccattagtaagtgaaatagttagtggactttaattgccttgatcactcacttactcatcttgtgtattataaatagggcta 40274431  T
Q  161 atattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctctgat 235  Q
    |||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  40274430 atattgtattgcaaagacacacttgtgaagagaataatacaaagtgctttcatcttctccttcctcttctttgat 40274356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 69 - 230
Target Start/End: Complemental strand, 40279311 - 40279150
Alignment:
Q  69 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 168  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||  |||||||||||||||| ||||||||||| |||||||||||  |||||||| |    
T  40279311 ttcctataactcccattagtaagtgaatagttagtggaccttaattgccttgatcactcacttactcatcttgtgtactataaatagggttcatattgta 40279212  T
Q  169 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    ||  ||||||||| ||||||||||||||||| |||||| ||||||||||| ||| |||||||    
T  40279211 ttgcaaagacacatttgtgaagagaataatataaagtgttttcatcttctcctttctcttct 40279150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 230
Target Start/End: Original strand, 29530120 - 29530291
Alignment:
Q  60 tctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggact 159  Q
    |||| ||||||||| ||| |||||| | | | || || |||||||| ||||||||   ||||||| ||||||  |||| ||||||| ||||||||||||     
T  29530120 tcttccactttcctgtaaaccccatcagtaaatgcatggttagtggtccttaattggtttgatcattcacttgctcat-ttgtgtcatataaataggacc 29530218  T
Q  160 catattgaattctaaaga-cacacttgtgaag-agaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
     |||||| | | |||||| ||||||||  ||  |||||||||||||||| |||||||| ||||||||||||||    
T  29530219 tatattgtaatgtaaagaacacacttgaaaaatagaataatacaaagtgttttcatctccttcttcctcttct 29530291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 29547775 - 29547940
Alignment:
Q  60 tctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggact 159  Q
    |||| ||| ||||||||| |||||||| | | || || |||||||| ||||||||   ||||||| ||||||  |||| || |||||||||||||||||     
T  29547775 tcttccaccttcctataatccccattagtaaatgcatggttagtggtccttaatttgtttgatcattcacttgctcat-ttatgtcctataaataggacc 29547873  T
Q  160 catattgaattctaaaga-cacacttgtgaa-gagaataatacaaagtgctttcatcttcttcttcc 224  Q
     |||||| | | |||||| ||||||||  || |||||||||||||| |  |||||||||||||||||    
T  29547874 tatattgtaatgtaaagaacacacttgaaaaagagaataatacaaaatattttcatcttcttcttcc 29547940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 203
Target Start/End: Complemental strand, 28201817 - 28201654
Alignment:
Q  40 tagtggatttccatccttagtctttcactttcctataaccc-ccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    |||||||| |||||||||  |||| ||| |||||||||||| |||||| ||| || || |||||| | | ||||||   ||||| | |||||| |||||     
T  28201817 tagtggatgtccatcctttatcttccaccttcctataaccctccattagtgaatgtatggttagtagtctttaattgctttgataattcacttgttcat- 28201719  T
Q  139 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaa 203  Q
    || ||||||||||||| ||||||||||  | | |||   ||||||||| ||||||||| ||||||    
T  28201718 ttatgtcctataaatatgactcatattttaatgtaatagcacacttgtaaagagaatagtacaaa 28201654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 27417509 - 27417427
Alignment:
Q  108 cttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaag 190  Q
    ||||||||  ||||||| ||||||| |||| |||| || |||||||||||||| ||||  | | |||||||||||||| ||||    
T  27417509 cttaattaatttgatcattcacttactcatattgtatcttataaataggactcgtattataatgtaaagacacacttgagaag 27417427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 8832646 - 8832532
Alignment:
Q  117 cttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatctt 216  Q
    |||||||||||||||| ||||||||||| |||||||||||  |||||||| |||  ||||||||| |  ||||||||||||||||||||| ||||||| |    
T  8832646 cttgatcactcacttactcatcttgtgtactataaatagggttcatattgtattgcaaagacacagtcttgaagagaataatacaaagtgatttcatcct 8832547  T
Q  217 cttcttcctcttctc 231  Q
    || ||||||||||||    
T  8832546 ctccttcctcttctc 8832532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 39875817 - 39875940
Alignment:
Q  105 gaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaag 204  Q
    ||||||||||  |||||||||||||||| ||||||||||| |||||||||   ||| ||||| |||  |||||||||||||||||||||  ||||||||     
T  39875817 gaccttaattgccttgatcactcacttactcatcttgtgtactataaataaagctcctattgtattgcaaagacacacttgtgaagaga--aatacaaat 39875914  T
Q  205 tgctttcatcttcttcttcctcttct 230  Q
    | |||||||||||||| |||| ||||    
T  39875915 tactttcatcttcttcctccttttct 39875940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 44126823 - 44126711
Alignment:
Q  118 ttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaa-gacacacttgtgaagagaataatacaaagtgctttcatctt 216  Q
    ||||||| ||||||  |||| ||||||||||||||||||||  |||||| | | | || |||||||||||||||||||||||||||||| ||||||||||    
T  44126823 ttgatcattcacttgctcat-ttgtgtcctataaataggacctatattgtaatgtgaatgacacacttgtgaagagaataatacaaagtactttcatctt 44126725  T
Q  217 cttcttcctcttct 230  Q
    |||||| |||||||    
T  44126724 cttctttctcttct 44126711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 21587306 - 21587185
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||| | |||| ||||| |||| ||| |||||||||||||||||| |||  | || |||||||  |||||| |   ||||||| ||||||  ||||     
T  21587306 ttagtgggtgtccacccttaatcttccaccttcctataacccccattagtgaaagtatggttagtgatccttaactgctttgatcattcacttgctcat- 21587208  T
Q  139 ttgtgtcctataaataggactca 161  Q
    |||||||||||||||||||||||    
T  21587207 ttgtgtcctataaataggactca 21587185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 13921708 - 13921757
Alignment:
Q  179 acacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    ||||||||||||||||||| |||||  ||||||||| |||||||||||||||    
T  13921708 acacttgtgaagagaataacacaaa--gctttcatcatcttcttcctcttct 13921757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 20458933 - 20458819
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||| |||||||||| |||| ||| ||||||||| |||||||| ||| ||  | ||||||| ||||||| | | ||||||| ||||||  ||||     
T  20458933 ttagtggatgtccatccttaatcttccaccttcctataa-ccccattagtgaatgtttggttagtgaaccttaaatgttttgatcattcacttgctcat- 20458836  T
Q  139 ttgtgtcctataaatag 155  Q
    ||||| |||||||||||    
T  20458835 ttgtgacctataaatag 20458819  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 20463299 - 20463226
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaa 112  Q
    ||||||||| ||||| ||||||||| | | ||||||||| ||| |||| ||| || || |||||||||||||||    
T  20463299 ttagtggatgtccattcttagtcttcctccttcctataatccctattagtgaatgtatggttagtggaccttaa 20463226  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 203
Target Start/End: Original strand, 19912279 - 19912443
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 138  Q
    ||||||||| |||| ||||| |||| ||| ||||||||||||| |||| ||| || || |||||| | ||||||||   ||||||||||||||  ||||     
T  19912279 ttagtggatgtccacccttaatcttccaccttcctataacccctattattgaatgtatggttagtagtccttaattgctttgatcactcacttgctcat- 19912377  T
Q  139 ttgtgtcctataaataggactcatatt-gaattctaaagacacacttgtgaagagaataatacaaa 203  Q
    ||||||||||||||||||||  |||||  |||   ||| | |||||||||||||||||||||||||    
T  19912378 ttgtgtcctataaataggacctatattataatgtaaaatatacacttgtgaagagaataatacaaa 19912443  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 34111131 - 34111054
Alignment:
Q  39 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattat 116  Q
    ||||||||| |||||||||| || | ||| |||||||||| | ||||| |||||||||||||||||||||||||||||    
T  34111131 ttagtggatgtccatccttaatcatccaccttcctataactcgcattagtgagtgaatagttagtggaccttaattat 34111054  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 45276354 - 45276475
Alignment:
Q  43 tggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgt 142  Q
    ||||| ||||||| |  |||| ||| ||||||||||||   ||| ||| || || |||||||| |||||||  | |||| || ||||||| |||| ||||    
T  45276354 tggatgtccatccctcatcttccaccttcctataacccatgttagtgaatgtatggttagtggtccttaatagttttgaccattcacttactcat-ttgt 45276452  T
Q  143 gtcctataaataggactcatatt 165  Q
    |||||||||||||||||||||||    
T  45276453 gtcctataaataggactcatatt 45276475  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 17909890 - 17909977
Alignment:
Q  140 tgtgtcctataaataggactcatattgaattctaaaga-cacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctc 226  Q
    |||||||||||||||||||| ||||   | | |||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  17909890 tgtgtcctataaataggacttatatctcaatgtaaagaacacacttgagaagagaataatacaaagtactttcatcttctccttcctc 17909977  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 10739137 - 10739183
Alignment:
Q  172 taaagacacacttgtgaagagaataatacaaagtgctttcatcttct 218  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||    
T  10739137 taaagatatacttgtgaagagaataatacaaagtgctttcatcttct 10739183  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 15007178 - 15007231
Alignment:
Q  172 taaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctc 226  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  15007178 taaagacacactggtgaagaga-taatacaaagtgctttcatcttctccttcctc 15007231  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 36911983 - 36911929
Alignment:
Q  176 gacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    ||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||    
T  36911983 gacacacttctgaagagaataataaaaagtgttttcaccttcttcttcctcttct 36911929  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 10734068 - 10734149
Alignment:
Q  139 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttc 220  Q
    |||| |||||||||||||||  | ||||   | |||||| | |||||||||||||||||||||||||| |||||||||||||    
T  10734068 ttgtatcctataaataggacctacattgtcatgtaaagatatacttgtgaagagaataatacaaagtgttttcatcttcttc 10734149  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 12145764 - 12145639
Alignment:
Q  92 tgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaa-taggactcatattgaattctaaagacacacttgtgaag 190  Q
    ||||||||||||||  ||||||||  ||||||||||||||  |||| |||||||||||||| || ||||||| |   | | |||| |||||||| |||||    
T  12145764 tgaatagttagtggttcttaattactttgatcactcacttgctcattttgtgtcctataaaataagactcatttgttagtgtaaaaacacacttctgaag 12145665  T
Q  191 agaataatacaaagtgctttcatctt 216  Q
    || |||||||| |  |||||||||||    
T  12145664 aggataatacacaaagctttcatctt 12145639  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 23599986 - 23599935
Alignment:
Q  179 acacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    |||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  23599986 acacttatgaagagaataatacaaaatgctttcatcttcttcttcatcttct 23599935  T

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Target: scaffold0248 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 16258 - 16311
Alignment:
Q  177 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 230  Q
    |||||| |||||||| |||||||||||||||||| || || |||||||||||||    
T  16258 acacacctgtgaagaaaataatacaaagtgcttttatatttttcttcctcttct 16311  T

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