View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_high_32 (Length: 241)
Name: NF11280A_high_32
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_high_32 |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 31 - 229
Target Start/End: Complemental strand, 40806076 - 40805878
Alignment:
| Q |
31 |
gggggtttgaacttcgtcactcttttttattcggttagtaattaattaactaatttgaagcacttttcccacaagtggtatgatattatactaaattctc |
130 |
Q |
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| T |
40806076 |
gggggtttgaacttcgtcactcttttttatttggttagtaattaattaactaatttgaagcacttttcccacaagtggtatgatattatactgaattctc |
40805977 |
T |
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| Q |
131 |
tccaaaaagtgcttccatgaaatggccaaattagtttagtagggcctaaaatagaataggcatataaataagcaggttacacacttacacatattcttc |
229 |
Q |
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| T |
40805976 |
tccaaaaagtgcttccatgaaatggccaaattagtttagtagggcctaaaatagaataggcatataaataagcaggttacacacttacacatattcttc |
40805878 |
T |
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Target: scaffold0559 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 31 - 229
Target Start/End: Original strand, 8566 - 8765
Alignment:
| Q |
31 |
gggggtttgaacttcgtcactcttttttattcggttagtaattaattaactaatttgaagcacttttcccacaagtggtatgatattatactaaattctc |
130 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8566 |
gggggtttgaacttcgtcactcttttttatttggttagtaattaattaactaatttgaagcacttttcccacaagtggtatgatattatactgaattctc |
8665 |
T |
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| Q |
131 |
tcc-aaaaagtgcttccatgaaatggccaaattagtttagtagggcctaaaatagaataggcatataaataagcaggttacacacttacacatattcttc |
229 |
Q |
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| T |
8666 |
tccaaaaaagtgcttccatgaaatggccaaattagtttagtagggcctaaaatagaataggcatataaataagcaggttacacacttacacatattcttc |
8765 |
T |
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