View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_high_35 (Length: 224)

Name: NF11280A_high_35
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_high_35
NF11280A_high_35
[»] chr2 (8 HSPs)
chr2 (24-224)||(2803204-2803404)
chr2 (140-214)||(33561499-33561573)
chr2 (140-212)||(30312825-30312897)
chr2 (115-217)||(13766795-13766899)
chr2 (140-213)||(29873586-29873659)
chr2 (171-212)||(36005930-36005971)
chr2 (140-224)||(2336660-2336744)
chr2 (171-215)||(31468797-31468841)
[»] chr5 (2 HSPs)
chr5 (110-224)||(10351209-10351325)
chr5 (140-212)||(36521946-36522018)
[»] chr6 (4 HSPs)
chr6 (140-217)||(8481962-8482039)
chr6 (140-207)||(5034876-5034943)
chr6 (140-181)||(27226675-27226716)
chr6 (140-212)||(6071168-6071240)
[»] chr4 (4 HSPs)
chr4 (115-193)||(42480533-42480611)
chr4 (171-217)||(22028412-22028458)
chr4 (140-212)||(34544142-34544215)
chr4 (148-224)||(23630348-23630424)
[»] chr1 (3 HSPs)
chr1 (140-212)||(1188638-1188710)
chr1 (171-217)||(32594761-32594807)
chr1 (140-213)||(1187413-1187486)
[»] chr8 (1 HSPs)
chr8 (140-217)||(4154326-4154402)
[»] chr7 (2 HSPs)
chr7 (175-224)||(7192786-7192835)
chr7 (171-212)||(21619095-21619136)
[»] chr3 (2 HSPs)
chr3 (140-181)||(260805-260846)
chr3 (115-192)||(32930698-32930775)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 24 - 224
Target Start/End: Complemental strand, 2803404 - 2803204
Alignment:
Q  24 tttcaaataagaaataacccttaaatatactttgtttcttacctaaggcaatgaaaaaatgtgataccaacaccaacggcaacaattgtaggttaaaagt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803404 tttcaaataagaaataacccttaaatatactttgtttcttacctaaggcaatgaaaaaatgtgataccaacaccaacggcaacaattgtaggttaaaagt 2803305  T
Q  124 ctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctc 223  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  2803304 ctcacattgtttaaagaagtggaggttgaacattctataaaagagatgacccataaacttaatgtcttaacgttttgggtaaaagtgtgatgtccaactc 2803205  T
Q  224 a 224  Q
    |    
T  2803204 a 2803204  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 33561573 - 33561499
Alignment:
Q  140 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgat 214  Q
    ||||||||||| |||| | |||||  |||| |||||||||||||| |||||||| ||||||||||| ||||||||    
T  33561573 aagtggaggttaaacactttataagtgagaggacccataaactcattgtcttaaggttttgggtaagagtgtgat 33561499  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 30312825 - 30312897
Alignment:
Q  140 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 212  Q
    |||||||||||||||| | |||||   |||||||||||||||| | |  ||||| ||||||||||||||||||    
T  30312825 aagtggaggttgaacactttataacttagatgacccataaacttatttccttaaggttttgggtaaaagtgtg 30312897  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 13766795 - 13766899
Alignment:
Q  115 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaa--gagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 212  Q
    |||| |||||| ||||| |||| | |||||||||||||  ||| |||||||  ||||||||  |||||||||||| ||||| |||||| || ||| ||||    
T  13766795 gttagaagtctaacattgtttagaaaagtggaggttgattattttataaaagtgagatgactaataaactcaatgacttaaggttttgtgttaaaatgtg 13766894  T
Q  213 atgtc 217  Q
     ||||    
T  13766895 gtgtc 13766899  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 29873659 - 29873586
Alignment:
Q  140 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtga 213  Q
    |||||||||||||||||| |||||  | || ||| |||||||||| || ||||| |||||| |||| |||||||    
T  29873659 aagtggaggttgaacattttataagtgggaggactcataaactcattgccttaaggttttgagtaagagtgtga 29873586  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 36005971 - 36005930
Alignment:
Q  171 gacccataaactcaatgtcttaacgttttgggtaaaagtgtg 212  Q
    |||||||||||||| || ||||| ||||||||||||||||||    
T  36005971 gacccataaactcattgccttaaggttttgggtaaaagtgtg 36005930  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 2336660 - 2336744
Alignment:
Q  140 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 224  Q
    |||||||||||||||| | |||||  |||| |||||||||| |||||| |||||  |||||||| ||  |||| |||||| ||||    
T  2336660 aagtggaggttgaacactttataagtgagaggacccataaattcaatgccttaagattttgggttaagatgtggtgtccaactca 2336744  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 31468841 - 31468797
Alignment:
Q  171 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatg 215  Q
    |||||||||||||| || ||||| ||||||||||| |||||||||    
T  31468841 gacccataaactcattgccttaaggttttgggtaagagtgtgatg 31468797  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 10351325 - 10351209
Alignment:
Q  110 tgtaggttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaa--cgttttgggtaaaa 207  Q
    |||| |||| ||||||||||||   |||| ||| |||||||||||||| ||||   || |||||||||||||||| ||||||||    ||||||||||||    
T  10351325 tgtaagttagaagtctcacattggctaaaaaagcggaggttgaacattttatacgtgaaatgacccataaactcattgtcttaaatatttttgggtaaaa 10351226  T
Q  208 gtgtgatgtccatctca 224  Q
    |||||||||| ||||||    
T  10351225 gtgtgatgtctatctca 10351209  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 36522018 - 36521946
Alignment:
Q  140 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 212  Q
    |||| ||||||||||| ||| |||| |||| |||||||||||  | || ||||| ||||||||||| ||||||    
T  36522018 aagttgaggttgaacactctttaaatgagaggacccataaaccaattgccttaaggttttgggtaagagtgtg 36521946  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 8481962 - 8482039
Alignment:
Q  140 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 217  Q
    |||||||||||||||| | |||||| |||||||| |||||||||| || |||||  |||||||||| |||||| ||||    
T  8481962 aagtggaggttgaacactttataaatgagatgactcataaactcattgccttaagattttgggtaagagtgtggtgtc 8482039  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 5034943 - 5034876
Alignment:
Q  140 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaa 207  Q
    ||||||||||||| || | |||||  |||||||||||| |||||||||| |||| ||||||| |||||    
T  5034943 aagtggaggttgaccactttataagtgagatgacccatcaactcaatgttttaaggttttggataaaa 5034876  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 27226716 - 27226675
Alignment:
Q  140 aagtggaggttgaacattctataaaagagatgacccataaac 181  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  27226716 aagtggaggttgatcattttataaatgagatgacccataaac 27226675  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 6071168 - 6071240
Alignment:
Q  140 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 212  Q
    |||||||||||||||| | |||||  ||||||| ||||||||||| || |||||  |||||| ||| ||||||    
T  6071168 aagtggaggttgaacactttataagtgagatgatccataaactcattgccttaagattttggataagagtgtg 6071240  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 42480533 - 42480611
Alignment:
Q  115 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaa 193  Q
    ||||||||||||| | ||||| || |||||||||||||||| | | |||  ||||||| |||||||||| |||||||||    
T  42480533 gttaaaagtctcatactatttgaaaaagtggaggttgaacaatatgtaagtgagatgatccataaactcgatgtcttaa 42480611  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 22028458 - 22028412
Alignment:
Q  171 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 217  Q
    |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  22028458 gacccataaactcattgtcttaatgttttgggtaagagtgtggtgtc 22028412  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 34544142 - 34544215
Alignment:
Q  140 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacg-ttttgggtaaaagtgtg 212  Q
    ||||||||||||| || | |||||| |||| |||||||||||||| || ||||| | |||||||||| ||||||    
T  34544142 aagtggaggttgatcactttataaatgagaggacccataaactcattgccttaaggtttttgggtaagagtgtg 34544215  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 23630348 - 23630424
Alignment:
Q  148 gttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 224  Q
    |||||||| | |||||  |||| ||| ||||||||||| |||||||   |||||||||||||||||| ||| |||||    
T  23630348 gttgaacactttataagtgagacgactcataaactcaacgtcttaagactttgggtaaaagtgtgatttccctctca 23630424  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 1188710 - 1188638
Alignment:
Q  140 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 212  Q
    |||||||||||||| ||| |||||  |||| ||| |||||||||| ||  |||| ||||||||||||||||||    
T  1188710 aagtggaggttgaatattttataagtgagaagactcataaactcattgctttaaggttttgggtaaaagtgtg 1188638  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 32594807 - 32594761
Alignment:
Q  171 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 217  Q
    |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  32594807 gacccataaactcattgtcttaaggttttgggtaagagtgtggtgtc 32594761  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 1187486 - 1187413
Alignment:
Q  140 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtga 213  Q
    ||||||||||| |||||| |||||  |||| |||||||||||||| |  |||||  ||||| ||||||||||||    
T  1187486 aagtggaggttaaacattttataagtgagaagacccataaactcattaccttaagattttgagtaaaagtgtga 1187413  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 4154402 - 4154326
Alignment:
Q  140 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 217  Q
    |||||||||||||||| | |||||  |||| |||||||||||||| || |||||  ||||||||||  ||||||||||    
T  4154402 aagtggaggttgaacactttataagtgaga-gacccataaactcattgccttaatattttgggtaagtgtgtgatgtc 4154326  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 7192786 - 7192835
Alignment:
Q  175 cataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 224  Q
    ||||||||||||||||||| |||||| |||||  ||||||||||| ||||    
T  7192786 cataaactcaatgtcttaaggttttgagtaaagatgtgatgtccaactca 7192835  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 21619136 - 21619095
Alignment:
Q  171 gacccataaactcaatgtcttaacgttttgggtaaaagtgtg 212  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  21619136 gacccataaacccattgtcttaaggttttgggtaaaagtgtg 21619095  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 260846 - 260805
Alignment:
Q  140 aagtggaggttgaacattctataaaagagatgacccataaac 181  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  260846 aagtggaggttgatcattttataaatgagatgacccataaac 260805  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 32930698 - 32930775
Alignment:
Q  115 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtctta 192  Q
    |||| |||||| | ||| |||| | |||| || |||||||||| |||||  |||||||| ||||||||||||||||||    
T  32930698 gttagaagtcttatattgtttagaaaagtagaagttgaacattttataagtgagatgactcataaactcaatgtctta 32930775  T

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