View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_high_5 (Length: 545)
Name: NF11280A_high_5
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 42445171 - 42445698
Alignment:
| Q |
1 |
attagatgcagctgtggaggatggtgtggatgtaatatcgatatcacttggtctaagtgagcctcctccatttttcaatgatagcactgccataggcgct |
100 |
Q |
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| T |
42445171 |
attagatgcagctgtggaggatggtgtggatgtaatatcgatatcacttggtctaagtgagcctcctccatttttcaatgatagcactgccataggcgct |
42445270 |
T |
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| Q |
101 |
tttgcagcaattcagaagggaatctttgtaagtattgcagcaggaaactttggtccttctgatgcctccttggttaatggagccccatggatgctcacag |
200 |
Q |
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| T |
42445271 |
tttgcagcaattcagaagggaatctttgtaagtattgcagcaggaaactttggtccttctgatgcctccttggttaatggagccccatggatgctcacag |
42445370 |
T |
|
| Q |
201 |
ttggagcaagcactattgacagaaccattgtggcaacagcagtgcttggaaatggggaagaatttgagggcgaatctgttttccagccttccgatttctc |
300 |
Q |
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| T |
42445371 |
ttggagcaagcactattgacagaaccattgtggcaacagcagtgcttggaaatggggaagaatttgagggcgaatctgttttccagccttccgatttctc |
42445470 |
T |
|
| Q |
301 |
tccaacactgttgcccttagcatatgcaggaataaatggcaaagtagaatcttcattttgtgctaatggatccttgagtgacattgacttcagaggaaag |
400 |
Q |
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| T |
42445471 |
tccaacactgttgcccttagcatatgcaggaataaatggcaaagtagaatcttcattttgtgctaatggatccttgagtgacattgacttcagaggaaag |
42445570 |
T |
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| Q |
401 |
gttgttttgtgtgagaggggagggggtataggaagaattgccaaaggacaggaagtacaaagagcaggtggtgccgccatgattctcatgaatgatgaac |
500 |
Q |
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| T |
42445571 |
gttgttttgtgtgagaggggagggggtataggaagaattgccaaaggacaggaagtacaaagagcaggtggtgccgccatgattctcatgaatgatgaac |
42445670 |
T |
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| Q |
501 |
tcaatggtttcagtctctcagctgatgt |
528 |
Q |
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| T |
42445671 |
tcaatggtttcagtctctcagctgatgt |
42445698 |
T |
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