View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_10 (Length: 456)
Name: NF11280A_low_10
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 14 - 449
Target Start/End: Complemental strand, 37507789 - 37507354
Alignment:
| Q |
14 |
agaagaccttagaaaatccagcgacggctgttaaaccagagaaacctagaaacagatattgaaggtgtacaataaagttgtacgagcatcctatatggta |
113 |
Q |
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| T |
37507789 |
agaagaccttagaaaatccagcgacggctgttaaaccagagaaacctagaaacagatattgaaggtgtacaataaagttgtacgagcatcctatatggta |
37507690 |
T |
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| Q |
114 |
agggctaaacaaaagtacactatccaccaaattatgccaaacttgctgcttggtctgcttcctgtggtcactctaatcgtgtccatacatagtagacgtt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37507689 |
agggctaaacaaaagtacactatccaccaaattatgccaaacttgctgcttggtctgcttcctgtggtcactctaatcgtgtccatacatagtagacgtt |
37507590 |
T |
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| Q |
214 |
tctattccctttttcttttctgatcaattttgtccttttccttgcttaacgtgcttcacttcacaacggtgccaatagaataccatatcttggacaagta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37507589 |
tctattccctttttcttttctgatcaattttgtccttttccttgcttaacgtgcttcacttcacaacggtgccaatagaataccatatcttggacaagta |
37507490 |
T |
|
| Q |
314 |
aagaattaaatacactttattcaagtactacccatgccatcacatattgcagagcaagcattttactcaactttattttaaatggcaaactatcgctgct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37507489 |
aagaattaaatacactttattcaagtactacccatgccatcacatattgcagagtaagcattttactcaactttattttaaatggcaaactatcgctgct |
37507390 |
T |
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| Q |
414 |
tacatgacaaattttcagtcatttggcaggtcaaaa |
449 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
37507389 |
tacatgacaaattttcagtcatttggcaggtcaaaa |
37507354 |
T |
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