View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_103 (Length: 303)
Name: NF11280A_low_103
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_103 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 21 - 303
Target Start/End: Original strand, 9808696 - 9808978
Alignment:
| Q |
21 |
gaaagtaaatcttgcgattcagaatgtgttgcctccggatgcctctttaacttgtgtgttgtgtaataatggagtggaaacatcatatcaccttttgtta |
120 |
Q |
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| T |
9808696 |
gaaagtaaatcttgcggtttgcaatgtattgcctccggatgcctctttaactggtgtgttgtgtaataatggagtggaaacatcatatcaccttttgtta |
9808795 |
T |
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| Q |
121 |
gattgtaatgttgtatccttagtgtggcgaaaggcgtgtgttttgctcgatttgaagtgttggagtgatgtggtgatgtcaaagaaatttcaaagagggt |
220 |
Q |
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| T |
9808796 |
gattgtaatgttgtatccttagtgtggcgaaaggtgtgtgttttgctcgatttgaagtgttggagtgatgtggtgatgtcaaagaaatttcaaagagggt |
9808895 |
T |
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| Q |
221 |
atagcatgatttggcatgccgcaatttgggtaattagggtcgagagaaatgggagaatctttaatagtatcgttaaggatatt |
303 |
Q |
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| T |
9808896 |
atagcatgatttggcatgccgcaatttgggtaattaggagcgagagaaatgggagaatctttaatagtatcgttaaggatatt |
9808978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 44164407 - 44164451
Alignment:
| Q |
72 |
ttgtgtgttgtgtaataatggagtggaaacatcatatcacctttt |
116 |
Q |
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| T |
44164407 |
ttgtgtgttgtgtgataatggagtggaaacatcgaatcacctttt |
44164451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 637632 - 637704
Alignment:
| Q |
27 |
aaatcttgcgattcagaatgtgttgcctccggatgcctctttaacttgtgtgttgtgtaataatggagtggaa |
99 |
Q |
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| T |
637632 |
aaatcttgcgattcataatgtattgcctccatatgggtctattacgtgtgtgttgtgtaataatggggtggaa |
637704 |
T |
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