View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_110 (Length: 295)

Name: NF11280A_low_110
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_110
NF11280A_low_110
[»] chr5 (4 HSPs)
chr5 (6-283)||(6205523-6205815)
chr5 (209-283)||(1585790-1585867)
chr5 (219-278)||(39585131-39585190)
chr5 (219-280)||(41613470-41613531)
[»] chr4 (10 HSPs)
chr4 (209-283)||(44277226-44277300)
chr4 (219-280)||(24636884-24636945)
chr4 (219-280)||(38004496-38004557)
chr4 (133-201)||(12294790-12294858)
chr4 (211-283)||(38579280-38579352)
chr4 (230-283)||(12291291-12291344)
chr4 (131-200)||(16506774-16506843)
chr4 (152-201)||(32203813-32203862)
chr4 (151-196)||(42517940-42517985)
chr4 (133-201)||(21392946-21393014)
[»] chr6 (2 HSPs)
chr6 (219-280)||(23659334-23659395)
chr6 (223-283)||(11573465-11573525)
[»] scaffold0025 (2 HSPs)
scaffold0025 (219-283)||(11758-11822)
scaffold0025 (152-200)||(11855-11903)
[»] chr3 (5 HSPs)
chr3 (133-201)||(45651162-45651230)
chr3 (209-283)||(7982695-7982769)
chr3 (152-201)||(49757927-49757976)
chr3 (222-280)||(17037880-17037938)
chr3 (230-280)||(34667052-34667102)
[»] chr7 (10 HSPs)
chr7 (133-200)||(25610983-25611050)
chr7 (151-200)||(33797376-33797425)
chr7 (133-201)||(13637977-13638045)
chr7 (133-201)||(13701664-13701732)
chr7 (219-283)||(38636251-38636315)
chr7 (156-200)||(40658888-40658932)
chr7 (151-201)||(2766455-2766505)
chr7 (209-283)||(25611074-25611148)
chr7 (219-280)||(38635858-38635919)
chr7 (219-283)||(38151558-38151622)
[»] chr1 (6 HSPs)
chr1 (209-283)||(4653705-4653779)
chr1 (133-201)||(11066875-11066943)
chr1 (230-280)||(3086019-3086069)
chr1 (219-280)||(45478971-45479032)
chr1 (133-193)||(18226892-18226952)
chr1 (152-200)||(43020932-43020980)
[»] chr8 (1 HSPs)
chr8 (152-197)||(8889700-8889745)
[»] chr2 (6 HSPs)
chr2 (219-280)||(27591190-27591251)
chr2 (219-260)||(34983873-34983914)
chr2 (230-280)||(150478-150528)
chr2 (209-279)||(4552456-4552526)
chr2 (135-201)||(21564181-21564246)
chr2 (152-201)||(9045028-9045077)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 283
Target Start/End: Original strand, 6205523 - 6205815
Alignment:
Q  6 acaagttgtgtgatgaatgtgataagcgggtaatgtataaaagagtgatagatggaaaataagccgtaagaaattaacaaatacacacatcatagttgtt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6205523 acaagttgtgtgatgaatgtgataagcgggtaatgtataaaagagtgatggatggaaaataagccgtaagaaattaacaaatacacacatcatagttgtt 6205622  T
Q  106 atatatactagagaaaagatgtatatatttttattgtgctgacatttgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaac---- 201  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||        
T  6205623 atatatactagagaaaagatgtatatgtttttattgtgctgacatttgtagaatatcaatgatattttatagaaattttgtatgtaaattacaaacgata 6205722  T
Q  202 -----------nnnnnnnatatagatagaaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttatatt 283  Q
                      |||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||| ||||||||||||||||    
T  6205723 ttttatataaattttttgatatagatagaaaattataagtatagatattcgtgacattcaaatgtaataaattcaacaaaccatatttatatt 6205815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 283
Target Start/End: Complemental strand, 1585867 - 1585790
Alignment:
Q  209 atatagatagaaaattataactatagat---attcgtgacatttaaatgtaacaagttcaataaaccatatttatatt 283  Q
    |||||||||  ||||||||| |||||||   ||| ||| | ||||||||||||||  |||||||||||||||||||||    
T  1585867 atatagataacaaattataagtatagattatatttgtggcttttaaatgtaacaaactcaataaaccatatttatatt 1585790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 39585190 - 39585131
Alignment:
Q  219 aaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatattt 278  Q
    |||||||||| |||||||||| ||||| || |||||||||||  |||| |||||||||||    
T  39585190 aaaattataagtatagatatttgtgactttcaaatgtaacaaactcaacaaaccatattt 39585131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 41613531 - 41613470
Alignment:
Q  219 aaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttat 280  Q
    |||||||||| ||||||||||  |||  ||||||||||||||  |||| |||||||||||||    
T  41613531 aaaattataagtatagatatttatgatttttaaatgtaacaaactcaacaaaccatatttat 41613470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 44277226 - 44277300
Alignment:
Q  209 atatagatagaaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttatatt 283  Q
    |||| ||||||||||||||| |||||||||| ||||| ||||||||||||||  |||| ||||||||||||||||    
T  44277226 atatggatagaaaattataaatatagatatttgtgacttttaaatgtaacaaactcaacaaaccatatttatatt 44277300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 24636945 - 24636884
Alignment:
Q  219 aaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttat 280  Q
    |||||||||| |||||||||| ||||| || |||||||||||  |||| |||||||||||||    
T  24636945 aaaattataagtatagatatttgtgactttcaaatgtaacaaactcaacaaaccatatttat 24636884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 38004557 - 38004496
Alignment:
Q  219 aaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttat 280  Q
    |||||||||| |||||||||| || || ||||||| |||||| ||||| |||||||||||||    
T  38004557 aaaattataagtatagatatttgttacttttaaatataacaaattcaacaaaccatatttat 38004496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 12294858 - 12294790
Alignment:
Q  133 tttttattgtgctgacatttgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaac 201  Q
    ||||||||| ||| ||  ||||||| |||||| |||||||||||||| |||||  ||||||||||||||    
T  12294858 tttttattgcgctaacgcttgtagactatcaacgatattttatagaaattttgcgtgtaaattacaaac 12294790  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 283
Target Start/End: Complemental strand, 38579352 - 38579280
Alignment:
Q  211 atagatagaaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttatatt 283  Q
    ||||||| |||||||||| |||||||||| ||||  || ||||||| |||  |||| ||||||||||||||||    
T  38579352 atagataaaaaattataagtatagatatttgtgattttcaaatgtagcaaactcaacaaaccatatttatatt 38579280  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 12291291 - 12291344
Alignment:
Q  230 tatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttatatt 283  Q
    |||||||||| ||||| || ||||||||||| ||||| || |||||||||||||    
T  12291291 tatagatatttgtgactttcaaatgtaacaaattcaacaatccatatttatatt 12291344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 16506843 - 16506774
Alignment:
Q  131 tatttttattgtgctgacatttgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaa 200  Q
    ||||||||||| ||| ||  ||||||| |||||| |||||||||||||| ||||   |||||||||||||    
T  16506843 tatttttattgagctaacgcttgtagattatcaacgatattttatagaaattttacgtgtaaattacaaa 16506774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 32203813 - 32203862
Alignment:
Q  152 tgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaac 201  Q
    |||||| |||| ||||||||||||| || ||||| |||||||||||||||    
T  32203813 tgtagattatcgatgatattttataaaaattttgcatgtaaattacaaac 32203862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 42517940 - 42517985
Alignment:
Q  151 ttgtagaatatcaatgatattttatagaagttttgtatgtaaatta 196  Q
    ||||||| |||||||||||||||||||||  ||||| |||||||||    
T  42517940 ttgtagattatcaatgatattttatagaaaatttgtgtgtaaatta 42517985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 21392946 - 21393014
Alignment:
Q  133 tttttattgtgctgacatttgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaac 201  Q
    ||||||||||||| |  | |||||| ||||||  ||||||||||||| |||||  ||||||||||||||    
T  21392946 tttttattgtgctaatgtgtgtagattatcaacaatattttatagaaattttgcgtgtaaattacaaac 21393014  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 23659395 - 23659334
Alignment:
Q  219 aaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttat 280  Q
    |||||||||| |||||||||| ||||| ||||||||||||||  |||| |||||||||||||    
T  23659395 aaaattataagtatagatatttgtgacttttaaatgtaacaaactcaacaaaccatatttat 23659334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 11573525 - 11573465
Alignment:
Q  223 ttataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttatatt 283  Q
    |||||| |||||||||| ||||| ||||||||||||||  |||| |||  |||||||||||    
T  11573525 ttataagtatagatatttgtgacttttaaatgtaacaaactcaacaaattatatttatatt 11573465  T

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Target: scaffold0025 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 11822 - 11758
Alignment:
Q  219 aaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttatatt 283  Q
    |||||||||| |||||||||| ||||| || |||||||||||  |||| ||||||||||||||||    
T  11822 aaaattataagtatagatatttgtgactttcaaatgtaacaaactcaacaaaccatatttatatt 11758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 11903 - 11855
Alignment:
Q  152 tgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaa 200  Q
    |||||| |||||| |||||||||||||| |||||| |||||||||||||    
T  11903 tgtagattatcaacgatattttatagaaattttgtctgtaaattacaaa 11855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 45651162 - 45651230
Alignment:
Q  133 tttttattgtgctgacatttgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaac 201  Q
    ||||||||||||| |||  | |||| ||||||||||||||||||||| ||||| ||||| |||||||||    
T  45651162 tttttattgtgctaacacgtatagattatcaatgatattttatagaaattttgcatgtatattacaaac 45651230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 7982695 - 7982769
Alignment:
Q  209 atatagatagaaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttatatt 283  Q
    ||||||||| ||||||||||  ||||||||| ||||| || |||||||||||  | || ||||||||||||||||    
T  7982695 atatagataaaaaattataagcatagatatttgtgactttcaaatgtaacaaactaaacaaaccatatttatatt 7982769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 49757927 - 49757976
Alignment:
Q  152 tgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaac 201  Q
    |||||| ||||||||||||||||||||| |||||  ||||||||||||||    
T  49757927 tgtagattatcaatgatattttatagaaattttgcgtgtaaattacaaac 49757976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 17037880 - 17037938
Alignment:
Q  222 attataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttat 280  Q
    ||||||| |||| ||||| ||||| || ||||||||||| ||||| |||||||||||||    
T  17037880 attataagtataaatatttgtgactttcaaatgtaacaaattcaacaaaccatatttat 17037938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 34667102 - 34667052
Alignment:
Q  230 tatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttat 280  Q
    |||||||||| || || |||||||||||||| ||||| |||||||||||||    
T  34667102 tatagatatttgtaacttttaaatgtaacaaattcaacaaaccatatttat 34667052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 25610983 - 25611050
Alignment:
Q  133 tttttattgtgctgacatttgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaa 200  Q
    ||||||||  ||| ||| ||||||| ||||||||||||||||||||| |||||  |||||||||||||    
T  25610983 tttttattacgctaacacttgtagattatcaatgatattttatagaaattttgcgtgtaaattacaaa 25611050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 33797425 - 33797376
Alignment:
Q  151 ttgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaa 200  Q
    ||||||| ||||||  |||||||||||||||||||| |||||||||||||    
T  33797425 ttgtagattatcaaatatattttatagaagttttgtgtgtaaattacaaa 33797376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 13637977 - 13638045
Alignment:
Q  133 tttttattgtgctgacatttgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaac 201  Q
    ||||||||  |||||||| |||||| ||| || |||||||||||||| |||||  ||||||||||||||    
T  13637977 tttttattacgctgacatgtgtagattatgaacgatattttatagaaattttgcgtgtaaattacaaac 13638045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 13701664 - 13701732
Alignment:
Q  133 tttttattgtgctgacatttgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaac 201  Q
    ||||||||| ||| |||| |||||| ||| || |||||||||||||| |||||  ||||||||||||||    
T  13701664 tttttattgcgctaacatgtgtagattatgaacgatattttatagaaattttgcgtgtaaattacaaac 13701732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 38636251 - 38636315
Alignment:
Q  219 aaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttatatt 283  Q
    |||||||||| ||||||| || ||||| || ||||||||||| ||||| ||| ||||||||||||    
T  38636251 aaaattataagtatagatttttgtgactttcaaatgtaacaaattcaacaaatcatatttatatt 38636315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 40658888 - 40658932
Alignment:
Q  156 gaatatcaatgatattttatagaagttttgtatgtaaattacaaa 200  Q
    ||||||||||||| |||||||||| |||||| |||||||||||||    
T  40658888 gaatatcaatgatgttttatagaaattttgtgtgtaaattacaaa 40658932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 2766505 - 2766455
Alignment:
Q  151 ttgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaac 201  Q
    ||||||| |||||| |||||||||||||| |||||  ||||||||||||||    
T  2766505 ttgtagattatcaacgatattttatagaaattttgattgtaaattacaaac 2766455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 25611074 - 25611148
Alignment:
Q  209 atatagatagaaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttatatt 283  Q
    ||||||||| |||||||| | |||||||||| ||||| || |||||||||||   ||| |||| |||||||||||    
T  25611074 atatagataaaaaattattagtatagatatttgtgactttcaaatgtaacaaacacaacaaactatatttatatt 25611148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 38635858 - 38635919
Alignment:
Q  219 aaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttat 280  Q
    |||||||||| | |||||||| |||||||  |||||||||||  |||| |||||||||||||    
T  38635858 aaaattataagtctagatatttgtgacatacaaatgtaacaaactcaacaaaccatatttat 38635919  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 38151622 - 38151558
Alignment:
Q  219 aaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttatatt 283  Q
    |||| ||||| |||||||||| ||||| || |||||||||||  |||| |||| |||||||||||    
T  38151622 aaaaatataaatatagatatttgtgactttcaaatgtaacaaactcaacaaactatatttatatt 38151558  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 4653705 - 4653779
Alignment:
Q  209 atatagatagaaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttatatt 283  Q
    ||||| ||| ||||||||||  ||| ||||| ||||| ||||||||||||||  |||| ||||||||||||||||    
T  4653705 atataaataaaaaattataaggataaatatttgtgacttttaaatgtaacaaactcaacaaaccatatttatatt 4653779  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 11066875 - 11066943
Alignment:
Q  133 tttttattgtgctgacatttgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaac 201  Q
    ||||||||| ||| |||  |||||| |||||| |||||||||||||| |||||  ||||||||||||||    
T  11066875 tttttattgcgctaacacgtgtagattatcaacgatattttatagaaattttgcgtgtaaattacaaac 11066943  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 3086019 - 3086069
Alignment:
Q  230 tatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttat 280  Q
    ||||||||||| |||| || |||||||||||  ||||||||||||||||||    
T  3086019 tatagatattcatgactttcaaatgtaacaaactcaataaaccatatttat 3086069  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 45478971 - 45479032
Alignment:
Q  219 aaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttat 280  Q
    |||||||||| |||||||||| ||||| || |||||||||||  || | |||||||||||||    
T  45478971 aaaattataaatatagatatttgtgactttcaaatgtaacaaactctacaaaccatatttat 45479032  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 18226952 - 18226892
Alignment:
Q  133 tttttattgtgctgacatttgtagaatatcaatgatattttatagaagttttgtatgtaaa 193  Q
    ||||||||||| |||| | |||||| |||| | |||||||||||||| |||||| ||||||    
T  18226952 tttttattgtgatgacgtatgtagattatcgacgatattttatagaaattttgtgtgtaaa 18226892  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 43020980 - 43020932
Alignment:
Q  152 tgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaa 200  Q
    |||||| |||||| |||||||||||||| |||||  |||||||||||||    
T  43020980 tgtagattatcaacgatattttatagaaattttgcgtgtaaattacaaa 43020932  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 8889745 - 8889700
Alignment:
Q  152 tgtagaatatcaatgatattttatagaagttttgtatgtaaattac 197  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||    
T  8889745 tgtagaatatcaatgatattttatagaaattttgcgtgtaaattac 8889700  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 27591251 - 27591190
Alignment:
Q  219 aaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttat 280  Q
    |||||||||| |||||||||| ||||| || ||||||||||| ||||| ||| |||||||||    
T  27591251 aaaattataagtatagatatttgtgactttcaaatgtaacaaattcaacaaatcatatttat 27591190  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 34983914 - 34983873
Alignment:
Q  219 aaaattataactatagatattcgtgacatttaaatgtaacaa 260  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  34983914 aaaattataactatagatatttgtgacttttaaatgtaacaa 34983873  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 150528 - 150478
Alignment:
Q  230 tatagatattcgtgacatttaaatgtaacaagttcaataaaccatatttat 280  Q
    |||||||||| ||||| ||||||||||||||  |||| |||||||||||||    
T  150528 tatagatatttgtgacttttaaatgtaacaaactcaacaaaccatatttat 150478  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 279
Target Start/End: Complemental strand, 4552526 - 4552456
Alignment:
Q  209 atatagatagaaaattataactatagatattcgtgacatttaaatgtaacaagttcaataaaccatattta 279  Q
    ||||||||| |||||||||| | ||||||||  |||  || |||||||||||  |||||||||||||||||    
T  4552526 atatagataaaaaattataagtttagatatttatgaatttcaaatgtaacaaactcaataaaccatattta 4552456  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 21564181 - 21564246
Alignment:
Q  135 tttattgtgctgacatttgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaac 201  Q
    ||||||| ||| |||  |||||| |||||| |||||||||||||| ||||| |||||||||||||||    
T  21564181 tttattgcgctaacacgtgtagattatcaacgatattttatagaa-ttttgcatgtaaattacaaac 21564246  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 9045028 - 9045077
Alignment:
Q  152 tgtagaatatcaatgatattttatagaagttttgtatgtaaattacaaac 201  Q
    |||||| |||||| |||||||||||||| ||||| || ||||||||||||    
T  9045028 tgtagattatcaacgatattttatagaaattttgcatttaaattacaaac 9045077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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