View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_117 (Length: 292)
Name: NF11280A_low_117
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_117 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 5132175 - 5132306
Alignment:
| Q |
6 |
gtttggtgttaagagaagtcaagaagatagaacaaaaagtggtgggccccatgttattatgctttctcctcaaactagagaagaaattgtgagaaatggc |
105 |
Q |
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| T |
5132175 |
gtttggtgtgaagagaagtcaagaagatagaacaaaaagtgatgggccccatgttattatgctttctcctcaaactagagaagaaattgtgagaaatggc |
5132274 |
T |
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| Q |
106 |
aggagagagtgtggtgttcagatattttcata |
137 |
Q |
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| T |
5132275 |
gggagagagtgcggtgttcagattttttcata |
5132306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 31492455 - 31492556
Alignment:
| Q |
16 |
aagagaagtcaagaagatagaacaaaaagtggtgggccccatgttattatgctttctcctcaaactagagaagaaattgtgagaaatggcaggagagagt |
115 |
Q |
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| T |
31492455 |
aagagaagtcaagaagagagaacaaaaagtggtgggccccatgtcattatgctttctcctcaaactagagaagaaattgcgaggaatggcaggagagagt |
31492554 |
T |
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| Q |
116 |
gt |
117 |
Q |
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|| |
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| T |
31492555 |
gt |
31492556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 5130947 - 5130878
Alignment:
| Q |
204 |
ccataatgttgcattgcggaatcatggactaaggtttacagcattaatacttcagtcagtcttttcagca |
273 |
Q |
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| T |
5130947 |
ccataatgttgcattgcggaatcatggactaaggtttacagcattaatacttcagtcagtcttttcagca |
5130878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 5140055 - 5140088
Alignment:
| Q |
174 |
ttagattgatgttgttagatgcatgaattaccat |
207 |
Q |
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| T |
5140055 |
ttagattgatgttgttagatgcataaattaccat |
5140088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 32865462 - 32865331
Alignment:
| Q |
6 |
gtttggtgttaagagaagtcaagaagatagaacaaaaagtggtgggccccatgttattatgctttctcctcaaactagagaagaaattgtgagaaatggc |
105 |
Q |
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||||||| | ||||||||| ||||||| | || ||||| ||||||| | |||| ||||| ||||||| |||||||||||||||||||||||| |||||| |
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| T |
32865462 |
gtttggtttgaagagaagttaagaagagaaaataaaaaatggtgggtcaaatgtcattatactttctcttcaaactagagaagaaattgtgaggaatggc |
32865363 |
T |
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| Q |
106 |
aggagagagtgtggtgttcagatattttcata |
137 |
Q |
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|||||||||| || ||||||||| ||| |||| |
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| T |
32865362 |
aggagagagtttgctgttcagatttttccata |
32865331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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