View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_119 (Length: 291)

Name: NF11280A_low_119
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_119
NF11280A_low_119
[»] chr5 (1 HSPs)
chr5 (14-291)||(11156225-11156502)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 11156502 - 11156225
Alignment:
Q  14 atcatgaagttcatagaagaaagtaaatgcaagcacttattccatcttgttttcaaatggcaaggaactatgtgaggtgacttaaaagccaaggtagcaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11156502 atcatgaagttcatagaagaaagtaaatgcaagcacttattccatcttgttttcaaatggcaaggaactatgtgaggtgacttaaaagccaaggtagcaa 11156403  T
Q  114 gttttgaatcacattcaatcaagagatgatgccagttattgttgtgagtagtttcaatagctaaaataactcccataatcccagcattaagagcattaga 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11156402 gttttgaatcacattcaatcaagagatgatgccagttattgttgtgagtagtttcaatagctaaaataactcccataatcccagcaataagagcattaga 11156303  T
Q  214 aatgatatgccaaggttgagggcaaaacatcccaaaattatcgccattgcagtttctgaaaataccagcacaagcatc 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11156302 aatgatatgccaaggttgagggcaaaacatcccaaaattatcgccattgcagtttctgaaaataccagcacaagcatc 11156225  T

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