View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_12 (Length: 451)
Name: NF11280A_low_12
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 7 - 451
Target Start/End: Complemental strand, 2727939 - 2727493
Alignment:
| Q |
7 |
tttggtgtttatcctatggatacaaattggggagttgcattgcttgatcttttgggaaatttggcatttcctttgatattgcttggtactttactcctta |
106 |
Q |
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| T |
2727939 |
tttggtgtttatcctatggatacaaattggggagttgcaatacttgatcttttgggaaatttggcatttcctttgatattgcttggtactttactcctta |
2727840 |
T |
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| Q |
107 |
ggacatctagaaataattctgttggtggccctaacttgccatttggattaggaaggtatgaattgtagcacgtgaaacttccata--actataaggatct |
204 |
Q |
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| T |
2727839 |
ggacatctagaaataattctgttggtggccctaacttgccatttggattaggaaggtatgaattgtagcacgtgaaacttccatataactataaggattt |
2727740 |
T |
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| Q |
205 |
aattccgtatatgcaccgatagtgtaaagattttttatactgtcagtcgatcataattgttcgatcatgtaaaagtttgacttccattatatcaaattaa |
304 |
Q |
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| T |
2727739 |
aattccgtatatgcaccgacagtgtaaagattttttatactgtcagtcgatcataattgttcgatcatgtaaaagtttgacttccattatatcaaattaa |
2727640 |
T |
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| Q |
305 |
aagtcagacaaatgtgatggtttgtgatcggttgacgctatagaaagttttacactgatagtacataaaaattattctctaagtaatgagttagttgtta |
404 |
Q |
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| T |
2727639 |
aagtcagacaaatgtgatggtttgtgatcggttgacgctatagaaagttttacactgatagtacataaaaattattctctaagtaatgagttagttgtta |
2727540 |
T |
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| Q |
405 |
tgatttgtttgaataaaaaggttaattaagcacttattagattagtg |
451 |
Q |
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| T |
2727539 |
tgatttgtttgaataaaaaggttaattaagcacttattagattagtg |
2727493 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 337
Target Start/End: Complemental strand, 40264034 - 40263923
Alignment:
| Q |
225 |
agtgtaaagattttttatactgtcagtcgatcataattgttcgatcatgtaaaagtttgacttccattatatcaaatt-aaaagtcagacaaatgtgatg |
323 |
Q |
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|||||||| |||||||| |||||||||| ||||||| |||||||||| ||||||||||||| ||| ||||| |||| ||||||| ||||| ||||| |
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| T |
40264034 |
agtgtaaatattttttacactgtcagtcaatcataactgttcgatcactaaaaagtttgactttcatcatatctaattaaaaagtcttacaaa--tgatg |
40263937 |
T |
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| Q |
324 |
gtttgtgatcggtt |
337 |
Q |
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| T |
40263936 |
gattgtgatcggtt |
40263923 |
T |
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