View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_121 (Length: 289)
Name: NF11280A_low_121
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_121 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 46028840 - 46029135
Alignment:
| Q |
1 |
catagagagatcatgtttaagggtaaaagatttaagagagtaaccttgtttggttagatgtaacatattgtgatcattaaggaacaaattgcaagattgt |
100 |
Q |
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| T |
46028840 |
catagagagatcatgtttaagggtaaaagatttaagagagtaaccttgtttggttagatgtaacatattgtgatcattaaggaacaaattgcaagattgt |
46028939 |
T |
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| Q |
101 |
ttttcaaagttgctagtggccaattaaaactgtgaaattaattagttagattaagttttacaactgagatttccttaaaatatttagttcgtaaatttga |
200 |
Q |
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| T |
46028940 |
ttttcaaagttgctagtggccaattaaaactttgaaattaattagttagattaagttttacaactgagatttccttaaaatatttagttcgtaaatttga |
46029039 |
T |
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| Q |
201 |
tataattggttgaaataa-------ttttgtactctttttcaatataacatttttgcttataaaatagttatgtttatgtgatattctaatttatg |
289 |
Q |
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| T |
46029040 |
tataattggttgaaataattttgtcttttgtactctttttcaatataacatttttgcttataaaatagttatgtttcagtgatactctaatttatg |
46029135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 46035201 - 46035288
Alignment:
| Q |
173 |
ccttaaaatatttagttcgtaaatttgatataattggttgaaataattttgtactctttttcaatata--acatttttgcttataaaa |
258 |
Q |
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| T |
46035201 |
ccttcaaaaatttagtttgtaaatttgatataattgattgaaatacttttgtgctcctatttaatacactacctttttgcttataaaa |
46035288 |
T |
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