View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_124 (Length: 288)
Name: NF11280A_low_124
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_124 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 56045570 - 56045301
Alignment:
| Q |
7 |
ctttgtcgtgtcatacttgtgtccacttgacgtgaacaactgattagagaatataggaaacttcctagcataaaaagtgttaaacctccagtaacatacg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
56045570 |
ctttgtcgtgtcatacttgtgtccacttgacgtgaacaactgattagagaatataggaaacttcctagcatcaaaagtgttaaacctccagtaacatacg |
56045471 |
T |
|
| Q |
107 |
ggtagaattatatagatgaacatgataaatccaaccccaacattaacaatggaagtccaaagtgcaacaagtgggcttccatgataagctgaaattccag |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56045470 |
ggtagaattatatagatgaacatgataaatccaaccccaacattaacaatggaagtccacggtgcaacaagtgggcttccatgataagctgaaattccag |
56045371 |
T |
|
| Q |
207 |
cccaatcaagtgtgaatgcaccaattccaagtccatggtaacctgatccaatttgttgtgctgtgatatt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56045370 |
cccaatcaagtgtgaatgcaccaattccaagtccatggtaacctgatccaatttgttgtgctgtgatatt |
56045301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 55707012 - 55706814
Alignment:
| Q |
26 |
tgtccacttgacgtgaacaactgattagagaatataggaaacttcctagcataaaaag-tgttaaacctccagtaacat-acgggtagaattatatagat |
123 |
Q |
| |
|
|||||||| || ||||||||||||||||| | |||||||||||||||||||| ||||| |||||||| |||| |||||| | | ||||||||||||||| |
|
|
| T |
55707012 |
tgtccactggatgtgaacaactgattagaaagtataggaaacttcctagcatcaaaaggtgttaaacttccactaacattatagatagaattatatagat |
55706913 |
T |
|
| Q |
124 |
gaacatgataaatccaaccccaacattaacaatggaagtccaaagtgcaacaagtgggcttccatgataagctgaaattccagcccaatcaagtgtgaa |
222 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |||||| ||| ||| |||||| ||||||||||||||||||||||| | ||| || ||||||||||| |
|
|
| T |
55706912 |
gaacaagataaatccaacccaaacattaacagtggaagaccacggtgtaacaagagggcttccatgataagctgaaatccaagcgcagtcaagtgtgaa |
55706814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University