View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_130 (Length: 283)
Name: NF11280A_low_130
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_130 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 4483850 - 4484115
Alignment:
| Q |
7 |
catccaaaccgattctttatccactagtccaacttttgaagcttctttgaacaaatgaatttccatttctaatgatgattgcagcactatgaacacacga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4483850 |
catccaaaccgattctttatccactagtccaacttttgaagcttctttgaacacatgaatttccatttctaatgatgattgcagcactatgaacacacga |
4483949 |
T |
|
| Q |
107 |
gactgtgtttgggttaacttaatcatctctttactaattagctctcctggatcatgtagagaagaaatcaagggaaggattaagcagtgctcaatcattg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4483950 |
gactgtgtttgggttaacttaatcatctctttactaattagctctcctggatcatgtagagaagaaatcaagggaaggattaagcagtgctcaatcattg |
4484049 |
T |
|
| Q |
207 |
aatccacatcttgaagggcttcacgtaacagggttagcatcccataatctccaccatacccttcat |
272 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4484050 |
aatccacatcttgaagggcttcacctaacagggttagcatcccataatctccaccatacccatcat |
4484115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 4488818 - 4489078
Alignment:
| Q |
7 |
catccaaaccgattctttatccactagtccaacttttgaagcttctttgaacaaatgaatttccatttctaatgatgattgcagcactatgaacacacga |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||| || ||| |
|
|
| T |
4488818 |
catccaagccgattctttatccactagtccaacttttgaagcttctttgaacacatgaattgccatttctaatgatgatttcagcactatgaaaacgcga |
4488917 |
T |
|
| Q |
107 |
gactgtgtttgggttaacttaatcatctctttactaattagctctcctggatcatgtagagaagaaatcaagggaaggattaagcagtgctcaatcattg |
206 |
Q |
| |
|
||||||||||| ||||||| | |||||||| ||||| ||||||| ||||||| |||||||||||||| ||||||| ||||| |||||| ||||||| |
|
|
| T |
4488918 |
gactgtgtttgttttaactttagcatctcttcactaactagctcttctggatcctgtagagaagaaattggtggaaggactaagcggtgctcgatcattg |
4489017 |
T |
|
| Q |
207 |
aatccacatcttgaagggcttcacgtaacagggttagcatcccataatctccaccataccc |
267 |
Q |
| |
|
| ||||| || ||||| || ||| || ||| | ||||||||| ||||||||||| ||||| |
|
|
| T |
4489018 |
agtccacgtcctgaagtgcctcagctagcagagctagcatcccgtaatctccaccgtaccc |
4489078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 34605298 - 34605236
Alignment:
| Q |
24 |
tatccactagtccaacttttgaagcttctttgaacaaatgaatttccatttctaatgatgatt |
86 |
Q |
| |
|
||||||||||||| | || ||||||||| || ||||||||||| |||||||||||||||||| |
|
|
| T |
34605298 |
tatccactagtcccatttgtgaagcttccttaaacaaatgaatgcccatttctaatgatgatt |
34605236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University