View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_132 (Length: 282)
Name: NF11280A_low_132
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_132 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 55075150 - 55075423
Alignment:
| Q |
1 |
ggccaccaaatttttctgtttttcaacccaagggataatctttaaagttgattgtgacttaacctttcacttggcacatgaaagtccatgttatctctcc |
100 |
Q |
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| T |
55075150 |
ggccaacaaatttttctgtttttcaacccaagggataatctttaaagttgattgtgacttaacctttcacttggcacatgaaagtccatgttatctctcc |
55075249 |
T |
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| Q |
101 |
ccacaaatcctctcatcaagacaacacattgtaagataaagggccctgtgatatcatgatatcctctcttcacatgaagatgctaacctctactctatcc |
200 |
Q |
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| T |
55075250 |
ccacaaatcatctcatcaagacaacacattgtaagataaagggccctgtgatatcatgatatcctctcttcacatgaagatgctaacctctactctatcc |
55075349 |
T |
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| Q |
201 |
agctagattagtcttctgttgtttggaattttaattgatattagtaattttgtgtggtgtctaaaatattcttc |
274 |
Q |
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| T |
55075350 |
agctagattagtcttctgttgtttgaaattttaattgatattagtaattttgtgtggtttctaaaatattcttc |
55075423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 50371291 - 50371212
Alignment:
| Q |
45 |
aagttgattgtgacttaacctttcacttggcacatgaaagtccatgtta-tctctccccacaaatcctctcatcaagacaa |
124 |
Q |
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| T |
50371291 |
aagttgatggtgactttacctttcatttggcacatgaaa-accatgttactctctccccacaattcttctcatcaagacaa |
50371212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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