View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_135 (Length: 280)

Name: NF11280A_low_135
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_135
NF11280A_low_135
[»] chr6 (27 HSPs)
chr6 (11-274)||(5688749-5689018)
chr6 (11-274)||(5177919-5178177)
chr6 (11-274)||(5279744-5280008)
chr6 (24-134)||(5242504-5242614)
chr6 (23-158)||(5126597-5126732)
chr6 (11-236)||(5065338-5065564)
chr6 (25-134)||(5427094-5427203)
chr6 (11-126)||(5398226-5398341)
chr6 (11-129)||(5346209-5346327)
chr6 (28-132)||(5100812-5100916)
chr6 (28-132)||(5135913-5136017)
chr6 (11-127)||(5180773-5180889)
chr6 (22-143)||(5098402-5098523)
chr6 (11-132)||(5156007-5156128)
chr6 (11-132)||(5372277-5372398)
chr6 (29-130)||(23127306-23127407)
chr6 (11-132)||(5351580-5351701)
chr6 (11-134)||(5352855-5352978)
chr6 (11-132)||(2939095-2939216)
chr6 (22-127)||(5283223-5283328)
chr6 (23-134)||(5072674-5072785)
chr6 (33-127)||(5439213-5439307)
chr6 (16-125)||(5253718-5253827)
chr6 (11-101)||(5334365-5334455)
chr6 (16-130)||(5124439-5124553)
chr6 (22-127)||(5256113-5256218)
chr6 (16-127)||(5448794-5448905)
[»] chr4 (7 HSPs)
chr4 (23-155)||(4122615-4122747)
chr4 (27-205)||(25569036-25569217)
chr4 (22-167)||(4132577-4132719)
chr4 (22-132)||(4319296-4319406)
chr4 (88-134)||(7884147-7884193)
chr4 (89-134)||(4346621-4346666)
chr4 (89-134)||(4362810-4362855)
[»] chr3 (4 HSPs)
chr3 (23-126)||(47985393-47985496)
chr3 (23-126)||(48003967-48004070)
chr3 (23-126)||(47994680-47994783)
chr3 (23-126)||(48013252-48013355)
[»] chr7 (1 HSPs)
chr7 (11-134)||(36212913-36213036)
[»] scaffold0294 (1 HSPs)
scaffold0294 (29-125)||(7878-7974)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 5689018 - 5688749
Alignment:
Q  11 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5689018 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagt 5688919  T
Q  111 ttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtg---tagtggtgatgaagatgaatgc 207  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  5688918 ttatctcgtatatgatgaaccaattcgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtagtggtgatgaagatgaatgc 5688819  T
Q  208 tattaagagaggtctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaatga 274  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||    
T  5688818 tattaagagaggtctcttctaatgcacaagattacaatgtcattgttggtagtagtggtgatgaaaatga 5688749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 5177919 - 5178177
Alignment:
Q  11 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 110  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||    
T  5177919 atgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagt 5178018  T
Q  111 ttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgctat 210  Q
    ||||||||||||||||||||||||  | ||||| ||||||||||| |||||||||||||||      ||||||||||||||||||||||||||||||| |    
T  5178019 ttatctcgtatatgatgaaccaattggagaaaaaatggagcaatgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgcttt 5178112  T
Q  211 -taagagaggtctcttctaatgcacaagattaccatgtcattgttagtagtggtgatgaaaatga 274  Q
     | ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5178113 gtcagagaagtctcttctaatgcacaagattacaatgtcattgttagtagtggtgatgaaaatga 5178177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 5279744 - 5280008
Alignment:
Q  11 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 110  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||    
T  5279744 atgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagt 5279843  T
Q  111 ttatctcgtatatgatgaaccaatccgtgaaaatatggagcaa---tgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgc 207  Q
    ||||||||||||||||||||||||  | ||||| |||||||||   || |||||||||||||||      ||||||||||||||||||||||||||||||    
T  5279844 ttatctcgtatatgatgaaccaattggagaaaaaatggagcaatattgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgc 5279937  T
Q  208 tat-taagagaggtctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaatga 274  Q
    | | | ||||| |||||||||||||||||||| ||| ||||||||||   |||||||||||||||||||||    
T  5279938 tttgtcagagaagtctcttctaatgcacaagaatacaatgtcattgttagtagtagtggtgatgaaaatga 5280008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 5242614 - 5242504
Alignment:
Q  24 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 123  Q
    ||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||| ||| |||||||||||||||| |||  ||||||||||||||||    
T  5242614 gagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatat 5242515  T
Q  124 gatgaaccaat 134  Q
    |||||||||||    
T  5242514 gatgaaccaat 5242504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 5126732 - 5126597
Alignment:
Q  23 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 122  Q
    ||||||||||||||||||||||| || |||||||||| ||| |||||  ||||||| | |||||||||||||||||||| ||| | ||||||||| ||||    
T  5126732 agagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatata 5126633  T
Q  123 tgatgaaccaatccgtgaaaatatggagcaatgtca 158  Q
    ||||||||||||  |||||| |||| ||||||||||    
T  5126632 tgatgaaccaattggtgaaactatgaagcaatgtca 5126597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 5065564 - 5065338
Alignment:
Q  11 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 110  Q
    |||| ||||| |||||||||||||||||||| |||||| | || ||||||||  |||||  ||||||||| ||||||||| |||||||||  ||||||||    
T  5065564 atgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagt 5065465  T
Q  111 ttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgctat 210  Q
    ||||||| ||||||||||||||||   ||||||   |||| | ||||| | ||||||  | |||| ||||||  |||| ||||||||| ||||||||| |    
T  5065464 ttatctcatatatgatgaaccaattgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatgcttt 5065365  T
Q  211 -taagagaggtctcttctaatgcacaa 236  Q
     || | ||| |||||||| ||||||||    
T  5065364 ctaggcgagatctcttctcatgcacaa 5065338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 5427094 - 5427203
Alignment:
Q  25 agagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatg 124  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||| ||| ||||| |||||| ||| |||  |||||||||||||||||    
T  5427094 agagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatg 5427193  T
Q  125 atgaaccaat 134  Q
    ||||||||||    
T  5427194 atgaaccaat 5427203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 5398226 - 5398341
Alignment:
Q  11 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 110  Q
    |||||||||| || || ||||||||||||||||||||| |||||||||| |||||||| | |||||| || || | ||||||||||||||| ||||||||    
T  5398226 atgaagaggggcaaagggtagtatcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagt 5398325  T
Q  111 ttatctcgtatatgat 126  Q
    |||||| |||||||||    
T  5398326 ttatcttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 5346209 - 5346327
Alignment:
Q  11 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 110  Q
    |||| ||||| |||||||| |||||||||||||||||| |||||||||||||||||||   |||| |||| || ||||||||||||||||| ||| || |    
T  5346209 atgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaat 5346308  T
Q  111 ttatctcgtatatgatgaa 129  Q
    ||||||| |||||||||||    
T  5346309 ttatctcatatatgatgaa 5346327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 5100916 - 5100812
Alignment:
Q  28 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 127  Q
    ||||||||||||||||||||  |||||||||||||||| |||  ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| ||||    
T  5100916 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5100817  T
Q  128 aacca 132  Q
    |||||    
T  5100816 aacca 5100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 5136017 - 5135913
Alignment:
Q  28 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 127  Q
    ||||||||||||||||||||  |||||||||||||||| |||  ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| ||||    
T  5136017 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5135918  T
Q  128 aacca 132  Q
    |||||    
T  5135917 aacca 5135913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 5180889 - 5180773
Alignment:
Q  11 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 110  Q
    |||||||||| ||||| ||||||||||| ||||||||  |||||||||||||||| |||| ||||||||| ||  |||||||||||||||| ||| || |    
T  5180889 atgaagagggtcagagggtagtatcaagcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagcaat 5180790  T
Q  111 ttatctcgtatatgatg 127  Q
    |||||| ||||||||||    
T  5180789 ttatctggtatatgatg 5180773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 5098402 - 5098523
Alignment:
Q  22 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 121  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||||  ||  |||||| || ||| ||||||||||||| || ||| |||||||||| ||||    
T  5098402 cagagggtaatatcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtat 5098501  T
Q  122 atgatgaaccaatccgtgaaaa 143  Q
    ||||||||| |||  |||||||    
T  5098502 atgatgaacaaattggtgaaaa 5098523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 5156128 - 5156007
Alignment:
Q  11 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 110  Q
    |||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||   || |||||| || |    ||||||||||||||| ||||||||    
T  5156128 atgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaacagt 5156029  T
Q  111 ttatctcgtatatgatgaacca 132  Q
    |||||| ||||| |||||||||    
T  5156028 ttatcttgtatacgatgaacca 5156007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 5372277 - 5372398
Alignment:
Q  11 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 110  Q
    |||||||||| ||||| |||||||||||| |||||||| |||||||||||||| |   || |||| | || || | ||||||||||||||| |||||| |    
T  5372277 atgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaacaat 5372376  T
Q  111 ttatctcgtatatgatgaacca 132  Q
    |||||||||||| |||||||||    
T  5372377 ttatctcgtatacgatgaacca 5372398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 23127407 - 23127306
Alignment:
Q  29 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatga 128  Q
    |||||||||||  ||||||| |||||||| |||||||||||   |||||||| || |||||| |||||||||| |||||||||||||| |||||||||||    
T  23127407 tagtatcaagtgcagaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatga 23127308  T
Q  129 ac 130  Q
    ||    
T  23127307 ac 23127306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 5351580 - 5351701
Alignment:
Q  11 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 110  Q
    |||| ||||| |||||  |||||||||||||||||||  ||||||||||||||||  ||| |||||| || || | || ||||||||| || |||  |||    
T  5351580 atgaggaggggcagaggttagtatcaagtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagtagt 5351679  T
Q  111 ttatctcgtatatgatgaacca 132  Q
    ||||||||||||||||||||||    
T  5351680 ttatctcgtatatgatgaacca 5351701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 5352978 - 5352855
Alignment:
Q  11 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 110  Q
    |||| ||||| |||||||||||||||||||| || ||| || ||||||| ||||| |||  |||||| || ||  ||||||| |||||||| |||||| |    
T  5352978 atgaggaggggcagagagtagtatcaagtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaacaat 5352879  T
Q  111 ttatctcgtatatgatgaaccaat 134  Q
    |||||| ||||||||| |||||||    
T  5352878 ttatctggtatatgataaaccaat 5352855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 2939095 - 2939216
Alignment:
Q  11 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 110  Q
    ||||||| || ||||| |||||||||||| || ||||| ||||||||||||||||   || |||| | || || | || ||||||||||||  ||||| |    
T  2939095 atgaagaagggcagagggtagtatcaagtctataacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaat 2939194  T
Q  111 ttatctcgtatatgatgaacca 132  Q
    ||||||||||||||||||||||    
T  2939195 ttatctcgtatatgatgaacca 2939216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 5283328 - 5283223
Alignment:
Q  22 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 121  Q
    ||||| ||| |||||||||| |||||  ||||||||||||||||  | | ||||||||| ||| |||||||||||||||| ||| || ||||||| ||||    
T  5283328 cagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcatatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtat 5283229  T
Q  122 atgatg 127  Q
    ||||||    
T  5283228 atgatg 5283223  T

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Target: chr6; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 5072785 - 5072674
Alignment:
Q  23 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 122  Q
    ||||| |||||||||||||||| ||| ||||| |||||||||||||   |||| |||| |||| |||||||||||| || |||| | |||||||| ||||    
T  5072785 agagattagtatcaagtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaataatttatctcatata 5072686  T
Q  123 tgatgaaccaat 134  Q
     |||||| ||||    
T  5072685 cgatgaatcaat 5072674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 5439213 - 5439307
Alignment:
Q  33 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 127  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||  | || | ||||||||  || || ||| ||| |||||||||||||||||    
T  5439213 atcaagtatagaacctggtaacaaagtggaggttgtttttgttttcaagaatgatttcattgccaaaaagacagcagcttatctcgtatatgatg 5439307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 5253718 - 5253827
Alignment:
Q  16 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 115  Q
    ||||| || |||||| ||| |||||| |||||| | || ||||||||| |||||  ||||||||| ||| |||||||||||||||  || ||||||||||    
T  5253718 gaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatc 5253817  T
Q  116 tcgtatatga 125  Q
    || |||||||    
T  5253818 tcatatatga 5253827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 5334365 - 5334455
Alignment:
Q  11 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaa 101  Q
    ||||||||||  |||| ||||||||| || |||||||| |||||||||||||||| |||| |||||| || || | ||||||| |||||||    
T  5334365 atgaagaggggtagagggtagtatcatgtctagaacctggtaacaaagtggaggtcgtttttgttttcgagaatgatttcattttgaagaa 5334455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 5124553 - 5124439
Alignment:
Q  16 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 115  Q
    ||||| || ||| ||||||| |||||||||||| |||| ||||||||  |||||| ||||||| | ||| | |||||||||||| | |||||| | |||     
T  5124553 gaggggcatagattagtatcgagtatagaacctggtaataaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtata 5124454  T
Q  116 tcgtatatgatgaac 130  Q
    |  ||||||||||||    
T  5124453 ttatatatgatgaac 5124439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 5256218 - 5256113
Alignment:
Q  22 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 121  Q
    ||||| ||| |||||||||| |||||  |||||||||||||||| || | ||||||  | || | ||||||||||||||| ||| || ||||| | ||||    
T  5256218 cagagggtaatatcaagtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtat 5256119  T
Q  122 atgatg 127  Q
    ||||||    
T  5256118 atgatg 5256113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 5448794 - 5448905
Alignment:
Q  16 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 115  Q
    ||||| |||||  |||||||||||||||||||  | |||||||||||| | |||| |||||| || || | ||||| |||| |||| |||  ||| ||||    
T  5448794 gaggggcagaggttagtatcaagtatagaacccggaaacaaagtggagatcgtttttgttttcgagaatgatttcactgtggagaagacagtagtatatc 5448893  T
Q  116 tcgtatatgatg 127  Q
    | ||||||||||    
T  5448894 tggtatatgatg 5448905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 4122747 - 4122615
Alignment:
Q  23 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 122  Q
    ||||||| ||||||| ||| |||||| || ||||||||||| |||||  ||||||||  ||| |||||||||||| ||| ||| ||||||||||| ||||    
T  4122747 agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 4122648  T
Q  123 tgatgaaccaatccgtgaaaatatggagcaatg 155  Q
    ||||||||||||| ||||||| || ||||||||    
T  4122647 tgatgaaccaatcggtgaaaaaatagagcaatg 4122615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 205
Target Start/End: Original strand, 25569036 - 25569217
Alignment:
Q  27 agtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttga---caacggtttcattgtgaagaaaacaacagtttatctcgtatat 123  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |||||||||      | ||||||  |||||||| ||||||||||||||||||||     
T  25569036 agtagtatcaagtatagaacctggaaacaaagtggaggttgtttttgtttttgagtggcgcagtttcaaagtgaagaatacaacagtttatctcgtatac 25569135  T
Q  124 gatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaat 205  Q
    ||||||| |||  | ||||  ||||||||| |||||  |  ||||||||||| |||||| | || |||||||||| ||||||    
T  25569136 gatgaactaattggcgaaataatggagcaaagtcaaacatcagaagaaaatgctattgtttttattggtgatgaaaatgaat 25569217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 4132719 - 4132577
Alignment:
Q  22 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 121  Q
    |||||||||||||||| ||| |||||| || ||||||| ||| |||||   |||||||  ||| |||||||||||| ||| ||| ||||||||||| |||    
T  4132719 cagagagtagtatcaaatatggaacctggtgacaaagtcgagattgtt---gtttttgggaacagtttcattgtgatgaagacagcagtttatctcatat 4132623  T
Q  122 atgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaaga 167  Q
    |||||||||||||  |||||||| ||| ||||||||| | ||||||    
T  4132622 atgatgaaccaattggtgaaaatttggggcaatgtcatgcacaaga 4132577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 4319406 - 4319296
Alignment:
Q  22 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 121  Q
    |||||||| ||| ||| ||| |||||| || |||| |||||| |||||   |||||||  ||| |||||||||||| ||| ||| ||||||||||| |||    
T  4319406 cagagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatat 4319307  T
Q  122 atgatgaacca 132  Q
    |||||||||||    
T  4319306 atgatgaacca 4319296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 7884193 - 7884147
Alignment:
Q  88 ttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 134  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||    
T  7884193 ttcattgtgaagaaaacaacaatttatcttgtctatgatgaaccaat 7884147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 4346621 - 4346666
Alignment:
Q  89 tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 134  Q
    ||||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  4346621 tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat 4346666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 4362810 - 4362855
Alignment:
Q  89 tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 134  Q
    ||||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  4362810 tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat 4362855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 47985496 - 47985393
Alignment:
Q  23 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 122  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||    
T  47985496 agagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 47985397  T
Q  123 tgat 126  Q
    ||||    
T  47985396 tgat 47985393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 48004070 - 48003967
Alignment:
Q  23 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 122  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||    
T  48004070 agagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 48003971  T
Q  123 tgat 126  Q
    ||||    
T  48003970 tgat 48003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 47994783 - 47994680
Alignment:
Q  23 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 122  Q
    ||||||||||||||||||||||| |  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||    
T  47994783 agagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 47994684  T
Q  123 tgat 126  Q
    ||||    
T  47994683 tgat 47994680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 48013355 - 48013252
Alignment:
Q  23 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 122  Q
    ||||||||||||||||||||||| |  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||    
T  48013355 agagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 48013256  T
Q  123 tgat 126  Q
    ||||    
T  48013255 tgat 48013252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 36213036 - 36212913
Alignment:
Q  11 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 110  Q
    |||| ||||| |||||| |||||||||||||||||||| || | ||| |||||||||||  ||||||||| |||  ||||||||||||||| ||| |  |    
T  36213036 atgaggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgat 36212937  T
Q  111 ttatctcgtatatgatgaaccaat 134  Q
    ||||||| | ||||||||||||||    
T  36212936 ttatctcatttatgatgaaccaat 36212913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 7974 - 7878
Alignment:
Q  29 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatga 125  Q
    ||||||||||| |||||||  | ||||||||||||||||||  ||||||||   |||||||||||| |||  |||||||| |||||||  |||||||    
T  7974 tagtatcaagtgtagaacccggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatcttatatatga 7878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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