View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_137 (Length: 279)

Name: NF11280A_low_137
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_137
NF11280A_low_137
[»] chr2 (7 HSPs)
chr2 (8-262)||(40851655-40851907)
chr2 (7-85)||(40840952-40841030)
chr2 (7-85)||(40845354-40845432)
chr2 (167-228)||(13866969-13867030)
chr2 (167-225)||(22878192-22878250)
chr2 (168-225)||(15370242-15370299)
chr2 (169-226)||(43456627-43456684)
[»] chr1 (9 HSPs)
chr1 (175-220)||(25944540-25944585)
chr1 (168-227)||(24460320-24460379)
chr1 (170-220)||(29793619-29793669)
chr1 (166-225)||(5886909-5886965)
chr1 (168-225)||(6292586-6292643)
chr1 (168-225)||(33976272-33976329)
chr1 (168-224)||(15784891-15784947)
chr1 (202-234)||(29128310-29128342)
chr1 (168-228)||(34536249-34536309)
[»] chr8 (7 HSPs)
chr8 (168-228)||(14926901-14926961)
chr8 (166-225)||(7714336-7714395)
chr8 (174-228)||(3634609-3634663)
chr8 (169-223)||(7648070-7648124)
chr8 (170-228)||(21130703-21130761)
chr8 (168-225)||(778483-778540)
chr8 (168-229)||(16162850-16162911)
[»] chr4 (6 HSPs)
chr4 (171-225)||(1017122-1017176)
chr4 (174-225)||(18628478-18628529)
chr4 (170-225)||(19429391-19429446)
chr4 (165-228)||(55870258-55870321)
chr4 (168-217)||(24193634-24193683)
chr4 (168-220)||(18512434-18512486)
[»] chr5 (7 HSPs)
chr5 (168-225)||(12459920-12459977)
chr5 (168-221)||(36796626-36796679)
chr5 (174-228)||(1084064-1084118)
chr5 (174-228)||(4855786-4855840)
chr5 (170-218)||(14706205-14706253)
chr5 (168-216)||(34198524-34198572)
chr5 (166-206)||(34736444-34736484)
[»] chr3 (7 HSPs)
chr3 (167-228)||(20210846-20210907)
chr3 (167-225)||(21872213-21872271)
chr3 (174-228)||(22667494-22667548)
chr3 (174-228)||(22724133-22724187)
chr3 (168-225)||(3775770-3775827)
chr3 (168-229)||(44014717-44014778)
chr3 (168-224)||(45541666-45541722)
[»] chr7 (6 HSPs)
chr7 (168-223)||(28691755-28691810)
chr7 (166-228)||(23214946-23215008)
chr7 (168-225)||(22387815-22387872)
chr7 (168-209)||(47046027-47046068)
chr7 (168-224)||(30535658-30535714)
chr7 (168-228)||(30748953-30749013)
[»] chr6 (1 HSPs)
chr6 (166-223)||(8420113-8420171)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 40851907 - 40851655
Alignment:
Q  8 tatgaaaatggtccttttaaattttccaaggataaggacttgtcccttgtttggaatgaatatggatgggacatggtacctattaaattattctgnnnnn 107  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  40851907 tatgaaaatggtccttttaaattttccaaggataagaacttgtcccttgtttggaatgaatatggatgggacatggtacctattaaattattct--ctgt 40851810  T
Q  108 nnnnnnnnnnnnnnnccactttagttctcactcatatattatcatcttgcaataatgacatgtttggattgacttatttgcgcttatttgctgacataaa 207  Q
                   |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40851809 tttgtttttctttttccactttatttctcactcatatatgatcatcttgcaataatgacatgtttggattgacttatttgcgcttaattgctgacataaa 40851710  T
Q  208 caattgtgagactgtttgagaattttattggaaacaacttatgtcatatctgtag 262  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  40851709 caattgtgagactgtttgagaatttttttggaaacaacttatgacatatctgtag 40851655  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 40841030 - 40840952
Alignment:
Q  7 ttatgaaaatggtccttttaaattttccaaggataaggacttgtcccttgtttggaatgaatatggatgggacatggta 85  Q
    |||||||||||| || ||| | || || ||||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  40841030 ttatgaaaatggaccatttcagttctcaaaggacaagaacttgtcccttgtttggaatgaatatggatgggacaaggta 40840952  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 40845432 - 40845354
Alignment:
Q  7 ttatgaaaatggtccttttaaattttccaaggataaggacttgtcccttgtttggaatgaatatggatgggacatggta 85  Q
    |||||||||||| || ||| | || || ||||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  40845432 ttatgaaaatggaccatttcagttctcaaaggacaagaacttgtcccttgtttggaatgaatatggatgggacaaggta 40845354  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 13867030 - 13866969
Alignment:
Q  167 atgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttgaga 228  Q
    |||||||||||||| |||||| |||||| | ||| |||||||| ||||||||||||||||||    
T  13867030 atgtttggattgacctatttgagcttatctactgccataaacacttgtgagactgtttgaga 13866969  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 22878250 - 22878192
Alignment:
Q  167 atgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttg 225  Q
    ||||||||||||||||||||| ||||||   ||||||||| || |||||||||||||||    
T  22878250 atgtttggattgacttatttgagcttatccactgacataagcacttgtgagactgtttg 22878192  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 15370242 - 15370299
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttg 225  Q
    |||||||||||||||||||| |||||| | ||| ||||| || |||||||||||||||    
T  15370242 tgtttggattgacttatttgagcttatctactggcataagcatttgtgagactgtttg 15370299  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 43456627 - 43456684
Alignment:
Q  169 gtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttga 226  Q
    ||||||||| |||||||||  ||||||| || ||||||||| |||| |||||||||||    
T  43456627 gtttggatttacttatttgaacttatttactcacataaacacttgtaagactgtttga 43456684  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 25944585 - 25944540
Alignment:
Q  175 attgacttatttgcgcttatttgctgacataaacaattgtgagact 220  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||    
T  25944585 attgacttatttgcgcttatttactgacataaacacttgtgagact 25944540  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 24460320 - 24460379
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttgag 227  Q
    ||||||||||||||||||||  ||||| | ||||||| | || |||||||||||||||||    
T  24460320 tgtttggattgacttatttgaacttatctactgacatgagcacttgtgagactgtttgag 24460379  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 29793619 - 29793669
Alignment:
Q  170 tttggattgacttatttgcgcttatttgctgacataaacaattgtgagact 220  Q
    |||| ||||||||||||| |||||| | |||||||||||| ||||||||||    
T  29793619 tttgtattgacttatttgagcttatctactgacataaacacttgtgagact 29793669  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 5886909 - 5886965
Alignment:
Q  166 catgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttg 225  Q
    |||||||||||||||||||||| ||||||   ||| ||||| |||||| |||||||||||    
T  5886909 catgtttggattgacttatttgagcttat---ctggcataagcaattgcgagactgtttg 5886965  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 6292643 - 6292586
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttg 225  Q
    |||||||||||||||||||| |||||| | ||||||||| || || ||||| ||||||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagcacttttgagattgtttg 6292586  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 33976329 - 33976272
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttg 225  Q
    |||||||||||||||||||| ||||||||  |||||| | || ||||||||| |||||    
T  33976329 tgtttggattgacttatttgagcttatttaatgacatcagcacttgtgagacagtttg 33976272  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 15784947 - 15784891
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgttt 224  Q
    |||||||||||||||||||| |||||||| ||| |||||| | ||| |||| |||||    
T  15784947 tgtttggattgacttatttgagcttatttactgtcataaaaacttgcgagattgttt 15784891  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 29128310 - 29128342
Alignment:
Q  202 cataaacaattgtgagactgtttgagaatttta 234  Q
    |||||||| ||||||||||||||||||||||||    
T  29128310 cataaacacttgtgagactgtttgagaatttta 29128342  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 34536309 - 34536249
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttgaga 228  Q
    |||||||| |||||||||||  | ||| |  ||||||||||| ||||||||||||||||||    
T  34536309 tgtttggaatgacttatttgaacgtatctattgacataaacacttgtgagactgtttgaga 34536249  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 14926901 - 14926961
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttgaga 228  Q
    ||||||||||||||||||||  ||||||| ||| ||||| || ||||||||||||||||||    
T  14926901 tgtttggattgacttatttgaacttatttactggcataagcacttgtgagactgtttgaga 14926961  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 7714395 - 7714336
Alignment:
Q  166 catgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttg 225  Q
    |||||||||||||||||||||| |||||| |  || |||||||| |||||||||||||||    
T  7714395 catgtttggattgacttatttgagcttatataatgtcataaacacttgtgagactgtttg 7714336  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 3634609 - 3634663
Alignment:
Q  174 gattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttgaga 228  Q
    |||||||||||||| |||||| ||||||||||  || |||| |||||||||||||    
T  3634609 gattgacttatttgagcttatctgctgacatatgcacttgtaagactgtttgaga 3634663  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 7648070 - 7648124
Alignment:
Q  169 gtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtt 223  Q
    |||||| |||||||||||| ||||||  |||| |||||||| |||||||||||||    
T  7648070 gtttgggttgacttatttgagcttatccgctggcataaacatttgtgagactgtt 7648124  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 21130761 - 21130703
Alignment:
Q  170 tttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttgaga 228  Q
    ||||| |||| | ||||| |||||| |||||||||||| | ||||||||||||||||||    
T  21130761 tttgggttgattgatttgagcttatgtgctgacataaatacttgtgagactgtttgaga 21130703  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 778540 - 778483
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttg 225  Q
    ||||||| ||||||||||||  ||||||| |||| |||| || |||||||||||||||    
T  778540 tgtttggtttgacttatttgtacttatttactgaaataagcacttgtgagactgtttg 778483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 16162911 - 16162850
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttgagaa 229  Q
    ||||||||||| |||||||| | |||| | ||  |||||||| |||||||||||||||||||    
T  16162911 tgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaa 16162850  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 1017176 - 1017122
Alignment:
Q  171 ttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttg 225  Q
    ||||||||||||||||| ||| || | |||||||||||| |||||||||||||||    
T  1017176 ttggattgacttatttgagctaatctactgacataaacacttgtgagactgtttg 1017122  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 18628478 - 18628529
Alignment:
Q  174 gattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttg 225  Q
    ||||||| |||||| |||||| | |||||||||||| |||||||||||||||    
T  18628478 gattgacgtatttgagcttatctactgacataaacacttgtgagactgtttg 18628529  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 19429391 - 19429446
Alignment:
Q  170 tttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttg 225  Q
    ||||||||| |||||||| |||||||| |||  ||||||| |||||||||||||||    
T  19429391 tttggattggcttatttgagcttatttactggtataaacacttgtgagactgtttg 19429446  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 55870258 - 55870321
Alignment:
Q  165 acatgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttgaga 228  Q
    ||||||||||||| ||||||||| | |||| |  ||||||||||| |||||||||| |||||||    
T  55870258 acatgtttggattaacttatttgagtttatctaatgacataaacatttgtgagactctttgaga 55870321  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 24193683 - 24193634
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgag 217  Q
    |||||||||||||||||||| |||||| | ||| |||||||| |||||||    
T  24193683 tgtttggattgacttatttgagcttatctcctggcataaacacttgtgag 24193634  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 18512434 - 18512486
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagact 220  Q
    ||||| |||| ||||||||| |||||| | |||||||||||| ||||||||||    
T  18512434 tgtttcgattaacttatttgagcttatctactgacataaacacttgtgagact 18512486  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 12459920 - 12459977
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttg 225  Q
    |||||||||||||||||||  |||||| ||||||||||| ||  ||||||||||||||    
T  12459920 tgtttggattgacttatttcggcttatctgctgacataagcacctgtgagactgtttg 12459977  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 36796626 - 36796679
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactg 221  Q
    |||||||||||||||||||| |||||| |  ||||||||||| |||||||||||    
T  36796626 tgtttggattgacttatttgagcttatctaatgacataaacacttgtgagactg 36796679  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 1084064 - 1084118
Alignment:
Q  174 gattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttgaga 228  Q
    |||||||||||||| | |||||| ||||||||| || |||||| |||||||||||    
T  1084064 gattgacttatttgagtttatttactgacataagcacttgtgaaactgtttgaga 1084118  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 4855840 - 4855786
Alignment:
Q  174 gattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttgaga 228  Q
    |||||||||||||| |||||| |  |||| |||||| ||||||||||||||||||    
T  4855840 gattgacttatttgagcttatataatgacttaaacacttgtgagactgtttgaga 4855786  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 14706205 - 14706253
Alignment:
Q  170 tttggattgacttatttgcgcttatttgctgacataaacaattgtgaga 218  Q
    |||||||||||||||||| |||||  | |||||||||||| ||||||||    
T  14706205 tttggattgacttatttgagcttacctactgacataaacacttgtgaga 14706253  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 34198572 - 34198524
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtga 216  Q
    |||||||||||||||||||| | |||||| || ||||||||| ||||||    
T  34198572 tgtttggattgacttatttgagtttatttactaacataaacacttgtga 34198524  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 34736444 - 34736484
Alignment:
Q  166 catgtttggattgacttatttgcgcttatttgctgacataa 206  Q
    |||||||||||||||||||||| |||||| || ||||||||    
T  34736444 catgtttggattgacttatttgagcttatctggtgacataa 34736484  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 20210846 - 20210907
Alignment:
Q  167 atgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttgaga 228  Q
    ||||||||||||| ||||||| | |||| | ||||||||| || ||||||||||||||||||    
T  20210846 atgtttggattgatttatttgaggttatctactgacataaccacttgtgagactgtttgaga 20210907  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 21872213 - 21872271
Alignment:
Q  167 atgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttg 225  Q
    ||||||||||| |||||||||  ||||| | ||||||||| || |||||||||||||||    
T  21872213 atgtttggattaacttatttgatcttatctactgacataagcacttgtgagactgtttg 21872271  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 22667548 - 22667494
Alignment:
Q  174 gattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttgaga 228  Q
    ||||| |||||||| |||||| | ||||||||| || ||||||||||||||||||    
T  22667548 gattggcttatttgagcttatctactgacataagcacttgtgagactgtttgaga 22667494  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 22724187 - 22724133
Alignment:
Q  174 gattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttgaga 228  Q
    ||||| |||||||| |||||| | ||||||||| || ||||||||||||||||||    
T  22724187 gattggcttatttgagcttatctactgacataagcacttgtgagactgtttgaga 22724133  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 3775770 - 3775827
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttg 225  Q
    ||||||||||| |||||||| | |||| | ||| ||||||||||||| ||||||||||    
T  3775770 tgtttggattgccttatttgagtttatctactggcataaacaattgttagactgtttg 3775827  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 44014717 - 44014778
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttgagaa 229  Q
    ||||||||||| |||||||| | |||| | ||  |||||||| |||||||||||||||||||    
T  44014717 tgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaa 44014778  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 45541722 - 45541666
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgttt 224  Q
    |||||||||||||||||||| ||||||||  ||  ||||||| |||| |||||||||    
T  45541722 tgtttggattgacttatttgagcttatttaatggtataaacacttgtaagactgttt 45541666  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 28691755 - 28691810
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtt 223  Q
    |||||||||||||||||||| | |||| |||| |||||| || |||||||||||||    
T  28691755 tgtttggattgacttatttgagtttatctgctaacataagcatttgtgagactgtt 28691810  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 23215008 - 23214946
Alignment:
Q  166 catgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttgaga 228  Q
    ||||||||||||||||||||||  ||||| | ||  |||||||| || |||||||||||||||    
T  23215008 catgtttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgaga 23214946  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 22387815 - 22387872
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttg 225  Q
    |||||||||||||||| | |  ||||||| ||||||||||||  ||||||||||||||    
T  22387815 tgtttggattgacttactagaacttatttactgacataaacacgtgtgagactgtttg 22387872  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 47046027 - 47046068
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaaca 209  Q
    |||||||||||||||||||| |||||| | ||||||||||||    
T  47046027 tgtttggattgacttatttgtgcttatctactgacataaaca 47046068  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 30535714 - 30535658
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgttt 224  Q
    |||||| ||||||||||||| | | |||| |||||||||||| ||| ||||||||||    
T  30535714 tgtttgaattgacttatttgagttaatttactgacataaacacttgagagactgttt 30535658  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 30748953 - 30749013
Alignment:
Q  168 tgtttggattgacttatttgcgcttatttgctgacataaacaattgtgagactgtttgaga 228  Q
    |||||| ||||| ||||||| |||||| | ||||||||| | | |||||||||||||||||    
T  30748953 tgtttgaattgagttatttgagcttatctactgacataagccaatgtgagactgtttgaga 30749013  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 8420113 - 8420171
Alignment:
Q  166 catgtttggattgactt-atttgcgcttatttgctgacataaacaattgtgagactgtt 223  Q
    ||||||||||||||||| ||||| |||||| |  ||||||||||| |||||||||||||    
T  8420113 catgtttggattgactttatttgagcttatctattgacataaacacttgtgagactgtt 8420171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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