View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_138 (Length: 278)
Name: NF11280A_low_138
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_138 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 14 - 270
Target Start/End: Complemental strand, 43142311 - 43142055
Alignment:
| Q |
14 |
agaccaaaccttttcaggggaatgtgtcctatatgactactgttactcttggaagattggcctgataggagtgctcaagctcatttatgtcatgacaaag |
113 |
Q |
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| T |
43142311 |
agaccaaaccttttcaggggaatgtgtcctatatgactactgttactcttggaagattggcctgataggagtgctcaagctcatttatgtcatgacaaag |
43142212 |
T |
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| Q |
114 |
gaaagaaaggctattgccattcttcatagcatccttcatttgtttgatcgctctgttcctgtaagggggaagatgcagtctttctcataggcgcatgaca |
213 |
Q |
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| T |
43142211 |
gaaagaaaggctattgccattcttcatagcatctttcatttgtttgatcgctctgttcctgtaagggggaagatgcagtctttctcataggcgcatgaca |
43142112 |
T |
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| Q |
214 |
acggaagcgtttccagattctatgacattcattattaagtaatgagtacctaaaata |
270 |
Q |
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| T |
43142111 |
acggaagcgtttccagattctatgacattcattattaagtaatgagtacctaaaata |
43142055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 43153875 - 43153741
Alignment:
| Q |
46 |
atgactactgttactcttggaagattggcctgataggagtgctcaagctcatttatgtcatgacaaaggaaagaaaggctattgccattcttcatagcat |
145 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| | |
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| T |
43153875 |
atgactactgttactcttggaagattggcctgatagaagtgctcaagctcatttatgtcatgacataggaaagaaagactattgccattctgcatagctt |
43153776 |
T |
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| Q |
146 |
ccttcatttgtttgatcgctctgttcctgtaaggg |
180 |
Q |
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| T |
43153775 |
ccttcatttgttttatctctctgttcctgtaaggg |
43153741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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