View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_139 (Length: 278)
Name: NF11280A_low_139
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_139 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 33102242 - 33102513
Alignment:
| Q |
1 |
ggaattccacttctcatagctatgtatggtgaatgttccggtacccttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgt |
100 |
Q |
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| T |
33102242 |
ggaattccacttctcatagctatgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgt |
33102341 |
T |
|
| Q |
101 |
ttctttttgagtatcgtggtgctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttc |
200 |
Q |
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| T |
33102342 |
ttctttttgagtatcgtggtgctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttc |
33102441 |
T |
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| Q |
201 |
tcttgatgggagagattttcttgagacagatgctgaggttggtgatgatggtaagcttcatgttcatttcag |
272 |
Q |
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| T |
33102442 |
tcttgatgggagagattttcttgagacagatgctgaggttggtgatgatggtaagcttcatgttcatgtcag |
33102513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 52716573 - 52716731
Alignment:
| Q |
46 |
cttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagt |
145 |
Q |
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| T |
52716573 |
cttatggtacaaattgttgttcttcaaagtgttatttggtacactcttatgttgtttttgtttgaatatagagctgctaaacttcttataacagaacagt |
52716672 |
T |
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| Q |
146 |
ttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctctt |
204 |
Q |
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| T |
52716673 |
ttcctgaaactgcagcttctataacatcattcaaagttgattctgacgttgtttctctt |
52716731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 52711358 - 52711419
Alignment:
| Q |
139 |
gaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttc |
200 |
Q |
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| T |
52711358 |
gaacagtttccagaaactgcagcttctataacatcattcaaagttgattctgatgttgtttc |
52711419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 10838822 - 10838577
Alignment:
| Q |
19 |
gctatgtatggtgaatgttccggtacccttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtg |
118 |
Q |
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| T |
10838822 |
gctatgtatggtgattattcaggtagcttaatggttcaagttgtggttcttcagtgtattatttggtacactcttttgctttttctttttgagtaccgtg |
10838723 |
T |
|
| Q |
119 |
gtgctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctcttgatgggagagattt |
218 |
Q |
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| T |
10838722 |
gtgctaagcttttaatcatggagcagtttccagaaaccgcggcttccatcgtttcctttaaggtcgattcggacgttatgtcgttagatggaagagattt |
10838623 |
T |
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| Q |
219 |
tcttgagacagatgctgaggttggtgatgatggtaagcttcatgtt |
264 |
Q |
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|||||| || ||||| |||||||||||||| ||| | |||||| |
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| T |
10838622 |
tcttgaaactgatgcatcagttggtgatgatgggaagttacatgtt |
10838577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 263
Target Start/End: Original strand, 34971055 - 34971296
Alignment:
| Q |
22 |
atgtatggtgaatgttccggtacccttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtg |
121 |
Q |
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| T |
34971055 |
atgtatggtgatgattctggtacccttatggttcaaatagttgttcttcaatgtatcatttggtatacattgatgttgtttttgtttgagtataggggtg |
34971154 |
T |
|
| Q |
122 |
ctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctcttgatgggagagattttct |
221 |
Q |
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| T |
34971155 |
ctaggattctcattgttgaacagtttcctgatactgctggttctattatatcattcaaagttgattctgatgttctttctttggatggtaaagagccact |
34971254 |
T |
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| Q |
222 |
tgagacagatgctgaggttggtgatgatggtaagcttcatgt |
263 |
Q |
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| | || || ||||| |||||||| |||||||| |||||||| |
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| T |
34971255 |
tcaaactgaagctgaagttggtgaagatggtaaacttcatgt |
34971296 |
T |
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