View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_140 (Length: 278)
Name: NF11280A_low_140
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_140 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 272
Target Start/End: Complemental strand, 17822393 - 17822129
Alignment:
| Q |
8 |
cacagatggcaaagtacacacatgtcatgagattattgaagatcttgataaacaaaacaagagaatcactctcaagctctttggtggagatattgatgaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
17822393 |
cacagatggcaaagtacacacatgtcatgagattattgaagatcttgataaacaaaacaagaaaatcactttcaagctctttggtggagatattgatgaa |
17822294 |
T |
|
| Q |
108 |
cactataaggtctttaagctcatccttgaagtaattgataagtctggtggaagtgcttctgttaaatggactattgaatatgagaaaatcaatgaggata |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17822293 |
cactataaggtctttaagctcatccttgaagtaattgataaagctggtggaaatgctgctgttaaatggactattgaatatgagaaaatcaatgaggata |
17822194 |
T |
|
| Q |
208 |
ttgatcctccaaatggctatatggactactttgccaaaagcactagagacatggatgctcatctt |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17822193 |
ttgatcctccaaatggctatatggactactttgccaaaagcactagagacatggatgctcatctt |
17822129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 245
Target Start/End: Complemental strand, 17780103 - 17779867
Alignment:
| Q |
9 |
acagatggcaaagtacacacatgtcatgagattattgaagatcttgataaacaaaacaagagaatcactctcaagctctttggtggagatattgatgaac |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||||| ||||| |||| ||||| | ||||| | |||||||||||||||||||||||||||| | |
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|
| T |
17780103 |
acagatggcaaggtacacacatgtcatgagagtcttgaagaagttgatgaacagaacaaaaaaatcattttcaagctctttggtggagatattgatgagc |
17780004 |
T |
|
| Q |
109 |
actataaggtctttaagctcatccttgaagtaattgataagtctggtggaagtgcttctgttaaatggactattgaatatgagaaaatcaatgaggatat |
208 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||| || ||| | |||| | ||||||||| ||||||||||||| ||||||||||| || |
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|
| T |
17780003 |
actacaaggtctttaagcttatccttgaagtaattgataagggtgatggcactgctgcatctaaatggacagttgaatatgagaagatcaatgaggacat |
17779904 |
T |
|
| Q |
209 |
tgatcctccaaatggctatatggactactttgccaaa |
245 |
Q |
| |
|
||| |||||||||||||| ||||| ||||||| |||| |
|
|
| T |
17779903 |
tgaccctccaaatggctacatggaatactttggcaaa |
17779867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 17801083 - 17800820
Alignment:
| Q |
9 |
acagatggcaaagtacacacatgtcatgagattattgaagatcttgataaacaaaacaagagaatcactctcaagctctttggtggagatattgatgaac |
108 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||||| ||||| || ||||||||| | |||| ||||||||||||||||||||||||||| | |
|
|
| T |
17801083 |
acagatggtaaggtacacacatgtcatgagaaggttgaagaaattgatgaaaaaaacaagaaaggcacttacaagctctttggtggagatattgatgagc |
17800984 |
T |
|
| Q |
109 |
actataaggtctttaagctcatccttgaagtaattgataagtctggtggaagtgcttctgttaaatggactattgaatatgagaaaatcaatgaggatat |
208 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||| || ||| | | || | |||||||||||| ||||||||| ||| ||||| |||||||| |
|
|
| T |
17800983 |
actataaggactttaagctcatcattgaagtaattgataagggtgatgggacttctgcagttaaatggactgttgaatatgtgaagatcaacgaggatat |
17800884 |
T |
|
| Q |
209 |
tgatcctccaaatggctatatggactactttgccaaaagcactagagacatggatgctcatctt |
272 |
Q |
| |
|
||| ||||||||||||| ||||| ||||| |||| | |||||||| || |||||||||||| |
|
|
| T |
17800883 |
tgaccctccaaatggctggatggattacttatgcaaatgtactagagatattgatgctcatctt |
17800820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 17691867 - 17691604
Alignment:
| Q |
9 |
acagatggcaaagtacacacatgtcatgagattattgaagatcttgataaacaaaacaagagaatcactctcaagctctttggtggagatattgatgaac |
108 |
Q |
| |
|
|||||||| || ||| ||||||||||||| | | ||||||| ||||| || | ||||| | |||| || |||| ||||||||| ||| |||||||| | |
|
|
| T |
17691867 |
acagatggtaaggtatacacatgtcatgaaagttttgaagaaattgatgaaaagaacaaaaaaatcgttcacaagatctttggtgaagaaattgatgagc |
17691768 |
T |
|
| Q |
109 |
actataaggtctttaagctcatccttgaagtaattgataagtctggtggaagtgcttctgttaaatggactattgaatatgagaaaatcaatgaggatat |
208 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||||||| ||| ||| | | ||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
17691767 |
aatataaggtctttaagctcatcattgaagtaattgataaggctgatggcactacttctgttaaatggactgttgaatatgagaagatcaatgaggatat |
17691668 |
T |
|
| Q |
209 |
tgatcctccaaatggctatatggactactttgccaaaagcactagagacatggatgctcatctt |
272 |
Q |
| |
|
||| ||||||||| | | ||||| ||| || |||| ||||| ||||||| |||||||||||| |
|
|
| T |
17691667 |
tgaacctccaaatagttggatggaataccttagcaaatgcactcgagacattgatgctcatctt |
17691604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 17717531 - 17717311
Alignment:
| Q |
11 |
agatggcaaagtacacacatgtcatgagattattgaagatcttgataaacaaaacaagagaatcactctcaagctctttggtggagatattgatgaacac |
110 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||| |||| ||||| |||| ||||| | ||||||| |||||||||| |||||||| |||||||| ||| |
|
|
| T |
17717531 |
agatggtaaggtacacacatgtcatgagagtatcgaag---ttgatgaacagaacaaaaaaatcactttcaagctcttcggtggagacattgatgagcac |
17717435 |
T |
|
| Q |
111 |
tataaggtctttaagctcatccttgaagtaattgataagtctggtggaagtgcttctgttaaatggactattgaatatgagaaaatcaatgaggatattg |
210 |
Q |
| |
|
|||||||||||||| | ||| || ||||||||||||| || ||| | || ||| ||||||||| |||||||| |||| |||||||||||||||| |
|
|
| T |
17717434 |
tataaggtctttaatttgatcattcaagtaattgataatggtgatggcactggagctgcaaaatggactgttgaatatcagaagatcaatgaggatattg |
17717335 |
T |
|
| Q |
211 |
atcctccaaatggctatatggact |
234 |
Q |
| |
|
| || |||||||||| ||||||| |
|
|
| T |
17717334 |
acccaccaaatggctggatggact |
17717311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 17869105 - 17868845
Alignment:
| Q |
9 |
acagatggcaaagtacacacatgtcatgagattattgaagatcttgataaacaaaacaagagaatcactctcaagctctttggtggagatattgatgaac |
108 |
Q |
| |
|
||||||||| | ||||||||||| |||||| | ||||||| ||||| | || ||||| | ||||||| |||||| ||||||||||||||||| | |
|
|
| T |
17869105 |
acagatggcgaggtacacacatgcaatgagagtgttgaagaagttgatgatcagaacaaaaaaatcacttacaagctgtttggtggagatattga---aa |
17869009 |
T |
|
| Q |
109 |
actataaggtctttaagctcatccttgaagtaattgataagtctggtggaagtgcttctgttaaatggactattgaatatgagaaaatcaatgaggatat |
208 |
Q |
| |
|
|||||||||| |||||||||||| | ||||| || | ||| ||| ||||||| || |||||| ||||| |||||| |||||||| | ||||||||||| |
|
|
| T |
17869008 |
actataaggtatttaagctcatcttagaagtgcttaacaaggctgatggaagttctgctgttagatggagtattgattatgagaagaataatgaggatat |
17868909 |
T |
|
| Q |
209 |
tgatcctccaaatggctatatggactactttgccaaaagcactagagacatggatgctcatctt |
272 |
Q |
| |
|
|||| |||||||||| | ||||| ||| || ||||||||||||||| || |||| ||||||| |
|
|
| T |
17868908 |
tgatactccaaatggttggatggattaccttagcaaaagcactagagatattgatggtcatctt |
17868845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 17813517 - 17813254
Alignment:
| Q |
9 |
acagatggcaaagtacacacatgtcatgagattattgaagatcttgataaacaaaacaagagaatcactctcaagctctttggtggagatattgatgaac |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||||| ||||| || | || || | | ||| | ||||||||| ||||||||||||| ||| |
|
|
| T |
17813517 |
acagatggcaaggtacacacatgtcatgagagtgttgaagaagttgatgaaaagaataaaaaactcagttacaagctcttcggtggagatattggtgaga |
17813418 |
T |
|
| Q |
109 |
actataaggtctttaagctcatccttgaagtaattgataagtctggtggaagtgcttctgttaaatggactattgaatatgagaaaatcaatgaggatat |
208 |
Q |
| |
|
||||||||| ||||| ||||| ||||| |||||||||| || | |||||| | ||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
17813417 |
actataaggattttaaactcattattgaaataattgataaaagtgacagtagtgctgccattaaatggactattgaatatgtgaagatcaatgaggatat |
17813318 |
T |
|
| Q |
209 |
tgatcctccaaatggctatatggactactttgccaaaagcactagagacatggatgctcatctt |
272 |
Q |
| |
|
||| |||| ||||||| ||||||||| |||| ||| |||||||| || |||||||||||| |
|
|
| T |
17813317 |
tgacgctcctaatggctggatggactacgttgctaaacttactagagatattgatgctcatctt |
17813254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 17920838 - 17920614
Alignment:
| Q |
9 |
acagatggcaaagtacacacatgtcatgagattattgaagatcttgataaacaaaacaagagaatcactctcaagctctttggtggagatattgatgaac |
108 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||| ||||| | || ||||| | ||||||| ||||||| ||||||||||||||||| | |
|
|
| T |
17920838 |
acagatggcaaggtacacacatgcaatgagcaggttgaagaagttgatgagcagaacaaaaaaatcactttcaagctgtttggtggagatattga---aa |
17920742 |
T |
|
| Q |
109 |
actataaggtctttaagctcatccttgaagtaattgataagtctggtggaagtgcttctgttaaatggactattgaatatgagaaaatcaatgaggatat |
208 |
Q |
| |
|
|||| |||||||||||||||||| | ||||| || | ||| | | ||||||| || |||||| |||||||||||| |||||||| | ||||||||| | |
|
|
| T |
17920741 |
actacaaggtctttaagctcatcttagaagtgcttaacaaggcagatggaagttctgctgttagatggactattgattatgagaagaacaatgaggaagt |
17920642 |
T |
|
| Q |
209 |
tgatcctccaaatggctatatggactac |
236 |
Q |
| |
|
||| |||||||||||| ||||||||| |
|
|
| T |
17920641 |
tgagactccaaatggctggatggactac |
17920614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 272
Target Start/End: Complemental strand, 17852020 - 17851822
Alignment:
| Q |
71 |
aatcactctcaagctctttggtggagatattgatgaacactataaggtctttaagctcatccttgaagtaattgataagtctggtggaagtgcttctgtt |
170 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||| | ||||| ||| ||| | ||||| | || || || |
|
|
| T |
17852020 |
aatcactttcaagctttttggtggagatattga---aaactataaggtctttaagctcatcttagaagtgattatcaaggataatggaacttctgctctt |
17851924 |
T |
|
| Q |
171 |
aaatggactattgaatatgagaaaatcaatgaggatattgatcctccaaatggctatatggactactttgccaaaagcactagagacatggatgctcatc |
270 |
Q |
| |
|
| |||||||||||| |||||||| | ||||||| || ||||| |||||||||| | ||||||||| || ||||||||||||||| || |||| ||||| |
|
|
| T |
17851923 |
agatggactattgattatgagaagaacaatgagaatgttgatactccaaatggttggatggactaccttagcaaaagcactagagatattgatggtcatc |
17851824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 71 - 272
Target Start/End: Complemental strand, 17817641 - 17817443
Alignment:
| Q |
71 |
aatcactctcaagctctttggtggagatattgatgaacactataaggtctttaagctcatccttgaagtaattgataagtctggtggaagtgcttctgtt |
170 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| | |||||||||||||||| | ||| | ||||| ||| ||| | ||||||| || ||||| |
|
|
| T |
17817641 |
aatcactttcaagctgtttggtggagatattga---aaactataaggtctttaacgttatcttagaagtgattatcaaggataatggaagttctgctgtt |
17817545 |
T |
|
| Q |
171 |
aaatggactattgaatatgagaaaatcaatgaggatattgatcctccaaatggctatatggactactttgccaaaagcactagagacatggatgctcatc |
270 |
Q |
| |
|
| |||||||||||| |||||||| | ||||||||||||||| |||| ||||||| ||||||||| || |||| |||||||||| || |||| ||||| |
|
|
| T |
17817544 |
agatggactattgattatgagaagaaaaatgaggatattgatactcccaatggctggatggactaccttagcaaatgcactagagatattgatggtcatc |
17817445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 272
Target Start/End: Complemental strand, 17843505 - 17843307
Alignment:
| Q |
71 |
aatcactctcaagctctttggtggagatattgatgaacactataaggtctttaagctcatccttgaagtaattgataagtctggtggaagtgcttctgtt |
170 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| | |||||||||||||||| | ||| | ||||| ||| ||| | ||||||| || ||||| |
|
|
| T |
17843505 |
aatcactttcaagctgtttggtggagatattga---aaactataaggtctttaacgttatcttagaagtgattatcaaggataatggaagttctgctgtt |
17843409 |
T |
|
| Q |
171 |
aaatggactattgaatatgagaaaatcaatgaggatattgatcctccaaatggctatatggactactttgccaaaagcactagagacatggatgctcatc |
270 |
Q |
| |
|
| ||||||||||| |||||||| | ||||||||||||||| |||| ||||||| ||||||||| || |||| |||||||||| || |||| ||||| |
|
|
| T |
17843408 |
agatggactattggttatgagaagaaaaatgaggatattgatactcccaatggctggatggactaccttagcaaatgcactagagatattgatggtcatc |
17843309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 17789127 - 17789075
Alignment:
| Q |
88 |
ttggtggagatattgatgaacactataaggtctttaagctcatccttgaagta |
140 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
17789127 |
ttggtggagatattgatgagcactataaggtctttaagctcattcttgaagta |
17789075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 17789211 - 17789171
Alignment:
| Q |
9 |
acagatggcaaagtacacacatgtcatgagattattgaaga |
49 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||||| |
|
|
| T |
17789211 |
acagatggcaaggtacacacatgtcatgagagtgttgaaga |
17789171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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