View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_141 (Length: 278)
Name: NF11280A_low_141
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_141 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 48993753 - 48993496
Alignment:
| Q |
15 |
atagcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48993753 |
atagcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaa |
48993654 |
T |
|
| Q |
115 |
ttcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcataccccc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48993653 |
ttcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcataccccc |
48993554 |
T |
|
| Q |
215 |
tagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgtc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48993553 |
tagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgtc |
48993496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 22623973 - 22624233
Alignment:
| Q |
11 |
taatatagcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaact |
110 |
Q |
| |
|
|||||||||||| |||| ||| || ||||||||||||||||| |||||||||||||||||||| ||||| ||||| | ||||| | ||| |||||| |
|
|
| T |
22623973 |
taatatagcactaggtgatgtgtactgcaacaaaagcacaaatctaaacatagcatcattttcgaccaagaaatttagcttattcgacaaagcaacaatc |
22624072 |
T |
|
| Q |
111 |
ccaattcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcatac |
210 |
Q |
| |
|
||||| || | |||||| ||||||| ||||||||||||| || ||||| |||||| ||| ||||||| | || ||||||||||||||||| ||||||| |
|
|
| T |
22624073 |
ccaataccaagaacaggtagcaccaagagtcttgccacaacaataccaatagtagttctaagtccaagtctagactcatttggtccttcagcaagcatac |
22624172 |
T |
|
| Q |
211 |
cccctagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgt |
271 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||| | ||||| || ||||||||||| |
|
|
| T |
22624173 |
cccctaatataagcatcacagaaggcaccattgcaccacctaaaatctctaaactatctgt |
22624233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University