View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_142 (Length: 277)
Name: NF11280A_low_142
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_142 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 277
Target Start/End: Complemental strand, 29448306 - 29448038
Alignment:
| Q |
9 |
gagatgaatattatcaagaaggaaaccatgtatatccaagactcaaagctttggatgcttatatgagggctttgaccacatgggctaaatgggttgatcg |
108 |
Q |
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| T |
29448306 |
gagaagaatattatcaagaaggaaaccatgtatatccaagactcaaagctttggatgcttatatgagggctttgaccacatgggctaaatgggttgatcg |
29448207 |
T |
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| Q |
109 |
aaaaattaacgccaatcatacgcaggttttcttcagaggatactcagttactcatttctggtacttttctctcttacttacatagcttccacaatacaac |
208 |
Q |
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| T |
29448206 |
aaaaattaacgccaatcatacgcaggttttcttcagaggatactcagttactcatttctggtacttttctctcttacttacatagcttccacaatacaac |
29448107 |
T |
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| Q |
209 |
tgcatctcagtttgagagttttatttgaatccatttatgaaagaatgcaactattttttaagacttctt |
277 |
Q |
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| T |
29448106 |
tgcatctcaatttgagagttttatttgaatccatttatgaaagaatgcaactattttttaagacttctt |
29448038 |
T |
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 14585927 - 14585773
Alignment:
| Q |
17 |
tattatcaagaaggaaaccatgtatatccaagactcaaagctttggatgcttatatgagggctttgaccacatgggctaaatgggttgatcgaaaaatta |
116 |
Q |
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|||||||||||||| |||||||| || ||||||||||||| | ||||||| |||| ||||| |||| || ||||||| |||| |||| || ||| |
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| T |
14585927 |
tattatcaagaaggcaaccatgtgtacccaagactcaaagttctggatgcatatacaagggcattgaaaacttgggctagatggattgacaacaatattg |
14585828 |
T |
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| Q |
117 |
acgccaatcatacgcaggttttcttcagaggatactcagttactcatttctggta |
171 |
Q |
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| T |
14585827 |
atgcaaatcgaacaaatgttttcttcagaggatactcagttactcatttcaggta |
14585773 |
T |
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