View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_145 (Length: 275)
Name: NF11280A_low_145
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_145 |
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| [»] scaffold0148 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 23 - 275
Target Start/End: Complemental strand, 26094 - 25842
Alignment:
| Q |
23 |
atgatattcggttggtcttaaattttatctatcatttgtggtgttttatgagtttccagtacattgattaattctcgacattttatctatcattttttcg |
122 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26094 |
atgatattcggttggtctcaaattttatctatcatttgtggtgttttatgagtttcgagtacattgattaattctcgacattttatctatcattttttcg |
25995 |
T |
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| Q |
123 |
cctttaaatggttaactaaacacattcacagattcgacaaaaagcgtaattttggattggccaatgcggtttgaaataattctcggaattgctcgtggac |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25994 |
cctttaaatggttaactaaacacattcacagattcgacaaaaagcgtaattttggattggccaatgcggtttgaaataattctcggaattgctcgtggac |
25895 |
T |
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| Q |
223 |
tgctctatcttcatcaagactcaagacttagagttattcaccgagatttgaaa |
275 |
Q |
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| T |
25894 |
tgctctatcttcatcaagactcaagacttagagttattcaccgagatttgaaa |
25842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 275
Target Start/End: Complemental strand, 21918240 - 21918009
Alignment:
| Q |
24 |
tgatattcggttggtcttaaattttatctatcatttgtggtgttttatgagtttccagtacattgattaattctcgacattttatctatcattttttcgc |
123 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| || |||| |||||||||||||||| | ||||| | |
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| T |
21918240 |
tgatattcggttggtctctaattttatctatcatttgtggtgttttctgcgtttggagtacattgattaattat-------------------ttttctc |
21918160 |
T |
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| Q |
124 |
ctttaaatggttaactaaacacattcacagattcgacaaaaagcgtaattttggattggccaatgcggtttgaaataattctcggaattgctcgtggact |
223 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21918159 |
ctttaaatggtaaactaaa-acattcacagattcgacaaaaagcgtaattttggattggccaatgcggtttgaaataattctcggaattgcccgtggact |
21918061 |
T |
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| Q |
224 |
gctctatcttcatcaagactcaagacttagagttattcaccgagatttgaaa |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21918060 |
gctctatcttcatcaagactcaagacttagagttattcaccgagatttgaaa |
21918009 |
T |
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