View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_146 (Length: 275)
Name: NF11280A_low_146
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_146 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 14370370 - 14370636
Alignment:
| Q |
1 |
ttcatcaaacaaccgaacattcacaaacgnnnnnnntccaattttttattttgtcttccattccacccatgaaccttgatactgtttttcttccaaaacc |
100 |
Q |
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| T |
14370370 |
ttcatcaaacaaccgaacattcacaaacgaaaaaaatccaattttttattttgtcttccattccacccatgaaccttgatactgtttttcttccaaaacc |
14370469 |
T |
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| Q |
101 |
aatttttcttcatgggttatctagcatacttcatatactattgcttgtggtggttttaatctcatgggtttggnnnnnnntcacaacttgtgttgtcaat |
200 |
Q |
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| T |
14370470 |
aatttttcttcatgggttatctagcatacttcatatactattgcttgtggcggttttaatctcatgggtttggaaaaaaatcacaacttgtgttgtcaat |
14370569 |
T |
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| Q |
201 |
gagtttaaggagacacctaatagcacaaaattatgttccattggtttctcttttttcaatattgttc |
267 |
Q |
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| T |
14370570 |
gagtttaaggagacacctaatagcacaaaattatgttccattggtttctcttttttcaattttgttc |
14370636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 37 - 226
Target Start/End: Complemental strand, 14242933 - 14242744
Alignment:
| Q |
37 |
tccaattttttattttgtcttccattccacccatgaaccttgatactgtttttcttccaaaaccaatttttcttcatgggttatctagcatacttcatat |
136 |
Q |
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| T |
14242933 |
tccaattttttattttgtcttccattacactcatgaaccttgatcctgtttttctttcaaaacccattttccttcatggattatctaccttaattcatgt |
14242834 |
T |
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| Q |
137 |
actattgcttgtggtggttttaatctcatgggtttggnnnnnnntcacaacttgtgttgtcaatgagtttaaggagacacctaatagcac |
226 |
Q |
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| T |
14242833 |
actgttgcttgtttcggttttagtctcatgggtttggaaaaaaatcacaacttgtgttatcaatgagtgtaaggagagaccaaacagcac |
14242744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 222
Target Start/End: Complemental strand, 41440757 - 41440603
Alignment:
| Q |
68 |
catgaaccttgatactgtttttcttccaaaaccaatttttcttcatgggttatctagcatacttcatatactattgcttgtggtggttttaatctcatgg |
167 |
Q |
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| T |
41440757 |
catgaaccttggaactgattttgtttttaaacccattttccttcatgggatatctagcttaattcatatactattgattcttgcagttttagtttcatgg |
41440658 |
T |
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| Q |
168 |
gtttggnnnnnnntcacaacttgtgttgtcaatgagtttaaggagacacctaata |
222 |
Q |
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| T |
41440657 |
gtttggagaaaatttacaacttttgttgtgaatgagtctaaggagaaacctaata |
41440603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 41453914 - 41453839
Alignment:
| Q |
68 |
catgaaccttgatactgtttttcttccaaaaccaatttttcttcatgggttatctagcatacttcatatactattg |
143 |
Q |
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||||||||||| |||| |||| ||| ||||| ||||| ||||||||| |||||||| || |||||||||||||| |
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| T |
41453914 |
catgaaccttggaactgattttgttcttaaacccattttccttcatgggatatctagcttaattcatatactattg |
41453839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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