View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_147 (Length: 273)
Name: NF11280A_low_147
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_147 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 34 - 267
Target Start/End: Complemental strand, 44515557 - 44515324
Alignment:
| Q |
34 |
ctcaatgtgtatattaccttcactcgttttacacattccctccaaccgttgacgtgcaaaacggtttactgcgtattgtgtagaaagctcaattggatct |
133 |
Q |
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| T |
44515557 |
ctcaatgtgtatattaccttcactcattttacacattccctccaaccgttgacgtgcaaaacggtttactacgtattgtgtagaaagctcaattggatct |
44515458 |
T |
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| Q |
134 |
tcaggcctaagggcgcaattgatcacgctttcaacacaagaaacaacaccaaaaatagaacagacccctgttnnnnnnnntggtcatgagcaacaatagc |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
44515457 |
tcaggcctaagggcgcaattgatcacgctttcaacacaagaaacaacaccaaaaatagaacagacccctgttaaaaaaaatggtcataagcaacaatagc |
44515358 |
T |
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| Q |
234 |
aagctagaacaggtttaattcaaccaaacaccaa |
267 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
44515357 |
aagctagaacaggtttaattcaactaaacaccaa |
44515324 |
T |
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