View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_151 (Length: 271)

Name: NF11280A_low_151
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_151
NF11280A_low_151
[»] chr3 (4 HSPs)
chr3 (10-259)||(35574856-35575115)
chr3 (38-67)||(36631068-36631097)
chr3 (16-67)||(20880500-20880552)
chr3 (16-67)||(30443917-30443969)
[»] chr5 (2 HSPs)
chr5 (16-67)||(10639977-10640029)
chr5 (24-67)||(42500244-42500287)
[»] chr8 (3 HSPs)
chr8 (16-62)||(16825532-16825578)
chr8 (15-67)||(1058070-1058122)
chr8 (16-67)||(10120780-10120832)
[»] chr7 (1 HSPs)
chr7 (16-67)||(38499907-38499959)
[»] chr4 (2 HSPs)
chr4 (16-67)||(17822859-17822911)
chr4 (17-65)||(21523584-21523632)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 35574856 - 35575115
Alignment:
Q  10 tgaattgcttatgtcaattttcatatgctttttctgcttattttcataagttctccaaccttgataataaaaacactttaaagcataagtggttatcata 109  Q
    ||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  35574856 tgaattgcttatgacaattttcataagttttttctgcttattttcataagttctccaaccttgatcataaaaacactttaaagcataagtgcttatcata 35574955  T
Q  110 ataaactttcaagttttaaaaatataaataagttgtttatccaaacaaacactttatca----------nnnnnnnnnnnagagaaaactttatcacata 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||||||||||||||||||||    
T  35574956 ataaactttcaagttttaaaaatataaataagttgtttatccaaacaaacactttatcacatattgttttttttttttttagagaaaactttatcacata 35575055  T
Q  200 ttgttgatttgtgttctcctacattaataattatattgaattttcattgatgatgatatt 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35575056 ttgttgatttgtgttctcctacattaataattatattgaattttcattgatgatgatatt 35575115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 67
Target Start/End: Original strand, 36631068 - 36631097
Alignment:
Q  38 tttttctgcttattttcataagttctccaa 67  Q
    ||||||||||||||||||||||||||||||    
T  36631068 tttttctgcttattttcataagttctccaa 36631097  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 20880552 - 20880500
Alignment:
Q  16 gcttatgtcaattttcatatgctttttct-gcttattttcataagttctccaa 67  Q
    ||||||| ||||||||||| |||||||   |||||||||||||||||||||||    
T  20880552 gcttatgacaattttcataagcttttttgagcttattttcataagttctccaa 20880500  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 30443969 - 30443917
Alignment:
Q  16 gcttatgtcaattttcatatgcttttt-ctgcttattttcataagttctccaa 67  Q
    ||||||| ||||||||| | ||||||| | |||||||||||||||||||||||    
T  30443969 gcttatgacaattttcacaagcttttttcagcttattttcataagttctccaa 30443917  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 10640029 - 10639977
Alignment:
Q  16 gcttatgtcaattttcatatgctttttct-gcttattttcataagttctccaa 67  Q
    ||||||| || |||||||| ||||||||| |||||||||||||||||||||||    
T  10640029 gcttatgacatttttcataagctttttctagcttattttcataagttctccaa 10639977  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 42500244 - 42500287
Alignment:
Q  24 caattttcatatgctttttctgcttattttcataagttctccaa 67  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||    
T  42500244 caattttcataagctttttcaacttattttcataagttctccaa 42500287  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 16825532 - 16825578
Alignment:
Q  16 gcttatgtcaattttcatatgctttttctgcttattttcataagttc 62  Q
    ||||||| ||||||||||| ||||||||  |||||||||||||||||    
T  16825532 gcttatgacaattttcataagctttttcaacttattttcataagttc 16825578  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 1058070 - 1058122
Alignment:
Q  15 tgcttatgtcaattttcatatgctttttctgcttattttcataagttctccaa 67  Q
    |||||||| || |||||||  | |||||| |||||||||||||||||||||||    
T  1058070 tgcttatgacatttttcattagttttttccgcttattttcataagttctccaa 1058122  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 10120832 - 10120780
Alignment:
Q  16 gcttatgtcaattttcatatgct-ttttctgcttattttcataagttctccaa 67  Q
    ||||||| || || ||||||||| ||||| |||||||||||||||||||||||    
T  10120832 gcttatgacatttatcatatgctgttttcagcttattttcataagttctccaa 10120780  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 38499907 - 38499959
Alignment:
Q  16 gcttatgtcaattttcatatgctttttct-gcttattttcataagttctccaa 67  Q
    ||||||| || |||||||| ||||||||  |||||||||||||||||||||||    
T  38499907 gcttatgacatttttcataagctttttccagcttattttcataagttctccaa 38499959  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 17822859 - 17822911
Alignment:
Q  16 gcttatgtcaattttcatatgctttttct-gcttattttcataagttctccaa 67  Q
    ||||||| || |||||||| ||||||| | |||||||||||||||||||||||    
T  17822859 gcttatgacatttttcataagctttttttagcttattttcataagttctccaa 17822911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 21523632 - 21523584
Alignment:
Q  17 cttatgtcaattttcatatgctttttctgcttattttcataagttctcc 65  Q
    |||||| || |||||||| |||||||| |||||||||||||| ||||||    
T  21523632 cttatgacatttttcataagctttttcagcttattttcataacttctcc 21523584  T

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