View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_152 (Length: 270)
Name: NF11280A_low_152
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_152 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 53042557 - 53042302
Alignment:
| Q |
1 |
actagatccaaaacaccaaactctgttttctgcatttgtgattttcgcnnnnnnnngcataatgagagaaaaatcgaaatcaaaaggaggatgctgtggt |
100 |
Q |
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| T |
53042557 |
actagatccaaaaccccaaactctgttttctgcatttgtgattttcgcttttttt-gcataatgagagaaaaatcgaaatcaaaaggaggatgctgtggt |
53042459 |
T |
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| Q |
101 |
tggtttattgcgtttgtcattctagctcttgttgttggtgctattgtttatgccgttaagaagaaaatcgataactcgaattccgataaacccgaaccgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53042458 |
tggtttattgcgtttgtcattctagctcttgttgttggtgctattgtttatgccgttaagaagaaaatcgataactcgaattccgataaacccgaaccgg |
53042359 |
T |
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| Q |
201 |
ttcccggtcctcctggtgctattggtcaaaaatatgcttctgctctcaaaactgcaa |
257 |
Q |
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| T |
53042358 |
ttcccggtcctcctggtgctattgatcaaaaatatgcttctgctctcaaaactgcaa |
53042302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 7482509 - 7482591
Alignment:
| Q |
57 |
gcataatgagagaaaaatcgaaatcaaaaggaggatgctgtggttggtttattgcgtttgtcattctagctcttgttgttggt |
139 |
Q |
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||||||||||||||| || || | ||||||||| || ||||||||||||||| | |||| ||||| ||||||||||||||| |
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| T |
7482509 |
gcataatgagagaaatattgaggttaaaaggagggtgtcgtggttggtttattgtgcttgtgattctggctcttgttgttggt |
7482591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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