View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_155 (Length: 270)
Name: NF11280A_low_155
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_155 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 270
Target Start/End: Original strand, 1556720 - 1556984
Alignment:
| Q |
7 |
ctgatatgaagaaatatcaatcatttgttgaccaatgacttaaccaaagttaaattgattagaagaaaggtcttaccatagttaatctcttgataacaaa |
106 |
Q |
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| T |
1556720 |
ctgataagaagaaatatcaatcatttgttgaccaatgacttaaccaaagttaaattgattagaagaaaggtcttaccatagttaatctcttgataacaaa |
1556819 |
T |
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| Q |
107 |
gatgaaacctttattgattggtaaattaaccaaagttaaatttgattagaagaaaggtcttcttactatagttcatcagattagaggaaagg-aaaaacc |
205 |
Q |
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| T |
1556820 |
gatgaaacctttattgattggtaaattaaccaaagttaaatttgattagaagaaaggtcttcttactatagttcatcagattagaggaaaggcaaaaacc |
1556919 |
T |
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| Q |
206 |
ttagttaaccaattaactaaataatagttaactaaattataagaaaggtcttactatagtaataa |
270 |
Q |
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| T |
1556920 |
ttagttaatcaattacctaaataatagttaactaaattataagaaaggtcttactatagttataa |
1556984 |
T |
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