View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_157 (Length: 269)

Name: NF11280A_low_157
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_157
NF11280A_low_157
[»] chr3 (4 HSPs)
chr3 (15-269)||(11897151-11897405)
chr3 (15-269)||(26432588-26432842)
chr3 (116-200)||(23424570-23424654)
chr3 (158-207)||(49149802-49149851)
[»] chr8 (2 HSPs)
chr8 (15-269)||(23132475-23132729)
chr8 (116-266)||(26587230-26587380)
[»] chr1 (5 HSPs)
chr1 (15-269)||(20284852-20285106)
chr1 (107-269)||(50236550-50236712)
chr1 (119-200)||(50451967-50452048)
chr1 (158-216)||(23465403-23465461)
chr1 (161-269)||(1524970-1525078)
[»] chr2 (11 HSPs)
chr2 (15-269)||(14653570-14653824)
chr2 (119-268)||(26791322-26791471)
chr2 (107-216)||(16322502-16322611)
chr2 (122-195)||(35135219-35135292)
chr2 (122-195)||(40328252-40328325)
chr2 (122-195)||(3779048-3779121)
chr2 (119-195)||(573266-573342)
chr2 (114-200)||(42403209-42403295)
chr2 (119-264)||(177504-177649)
chr2 (134-195)||(19265490-19265551)
chr2 (119-170)||(35062956-35063007)
[»] scaffold0036 (1 HSPs)
scaffold0036 (104-209)||(75967-76072)
[»] chr5 (3 HSPs)
chr5 (119-225)||(32874457-32874563)
chr5 (119-269)||(7817135-7817285)
chr5 (114-216)||(6641008-6641110)
[»] chr4 (3 HSPs)
chr4 (122-269)||(54477407-54477554)
chr4 (116-268)||(46784469-46784621)
chr4 (119-200)||(3881787-3881868)
[»] chr6 (4 HSPs)
chr6 (116-216)||(24990660-24990760)
chr6 (116-269)||(24893833-24893986)
chr6 (103-216)||(13599639-13599752)
chr6 (119-226)||(27852952-27853059)
[»] chr7 (4 HSPs)
chr7 (103-216)||(16769946-16770059)
chr7 (103-216)||(27781614-27781727)
chr7 (122-192)||(1353794-1353864)
chr7 (119-264)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 11897405 - 11897151
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggagcccatcttccttgggcgactgctgagttgatagcagc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||    
T  11897405 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagc 11897306  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897305 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 11897206  T
Q  215 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897205 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 11897151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 26432588 - 26432842
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggagcccatcttccttgggcgactgctgagttgatagcagc 114  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||| || ||  ||||||||||||||| ||| || ||||||||||||||    
T  26432588 ggacatcatttgcaaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagc 26432687  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 214  Q
     || |||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||    
T  26432688 ggatagcttttccatgcaaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattc 26432787  T
Q  215 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
    ||||||||||||||  | |  ||||  || |||||||||||||| ||||||||||    
T  26432788 caaagtatagagtagtttgatgaagagacacaatgcatgatgagtttgatggtga 26432842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 23424654 - 23424570
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 200  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||    
T  23424654 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggca 23424570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 49149802 - 49149851
Alignment:
Q  158 ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgtt 207  Q
    |||||||||||||| || ||||||| |||||||||| ||||||| |||||    
T  49149802 ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgtt 49149851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 23132475 - 23132729
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggagcccatcttccttgggcgactgctgagttgatagcagc 114  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23132475 ggacatcatctgcaaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 23132574  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132575 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 23132674  T
Q  215 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23132675 caaagtatagagtaactaggagaagctacgcaatgcatgatgaacttgatggtga 23132729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 266
Target Start/End: Complemental strand, 26587380 - 26587230
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 215  Q
    ||||| || ||||| ||||| ||||| || || || ||||| || |||||||||||||||||||||| ||||||||| || ||||| ||||| || || |    
T  26587380 gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttc 26587281  T
Q  216 aaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgg 266  Q
    |||| || | | |  |||  ||||  ||||||||||||||||| |||||||    
T  26587280 aaaggatggtgaaggtagatgaagtgacgcaatgcatgatgagtttgatgg 26587230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 20285106 - 20284852
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggagcccatcttccttgggcgactgctgagttgatagcagc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20285106 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 20285007  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||   |||||||||    
T  20285006 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttc 20284907  T
Q  215 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20284906 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 20284852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 269
Target Start/End: Original strand, 50236550 - 50236712
Alignment:
Q  107 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt 206  Q
    |||||| |||| || || ||||| || | ||||||||| |||||||| | ||||||||||| || ||||||||||| |||||||||||| |||| |||||    
T  50236550 atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt 50236649  T
Q  207 tcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
    |||||||||| |  ||||||||  | || || |  || |||||||||||||| ||| ||||||    
T  50236650 tcccgttccataagatagagtaggtgggtgaggagacacaatgcatgatgagtttggtggtga 50236712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 50452048 - 50451967
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 200  Q
    ||||| ||||| ||||| ||||| || ||||| || | |||||||||||||||||||||||| | ||| |||||| ||||||    
T  50452048 agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggca 50451967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 23465461 - 23465403
Alignment:
Q  158 ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcca 216  Q
    |||||||||||||| || ||||||| |||||||||| ||||||| ||||| || |||||    
T  23465461 ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttaccattcca 23465403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 269
Target Start/End: Complemental strand, 1525078 - 1524970
Alignment:
Q  161 tcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgagct 260  Q
    |||||||| || || || || |||||||||||||| || || ||||| || |||||||| |||||| |   |||||| |  || |||||||||||||| |    
T  1525078 tcaccttgccgaagaccgtgggaaggcttgaaaggaggtaatttgttaccattccaaagaatagagaaggcaggagaggtaacacaatgcatgatgagtt 1524979  T
Q  261 tgatggtga 269  Q
    |||||||||    
T  1524978 tgatggtga 1524970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 14653570 - 14653824
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggagcccatcttccttgggcgactgctgagttgatagcagc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  14653570 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagc 14653669  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 214  Q
     || ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  14653670 ggatagcttttccatgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattc 14653769  T
Q  215 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14653770 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 14653824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 268
Target Start/End: Complemental strand, 26791471 - 26791322
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 218  Q
    ||||| ||||||||||| || ||||| || ||||| | ||||||||| || | ||||||||||| ||||| |||||| |||||| | || || |||||||    
T  26791471 agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa 26791372  T
Q  219 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtg 268  Q
    | |||||| | || |  ||||  |||||||||||||||||||||||||||    
T  26791371 gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatggtg 26791322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 16322611 - 16322502
Alignment:
Q  107 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt 206  Q
    |||||| | ||||| |||||||||||||| |||||||| || || || | ||| ||||||||||| ||||||||||  ||||||||||| |||| |||||    
T  16322611 atagcaacagaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgt 16322512  T
Q  207 tcccgttcca 216  Q
    | || |||||    
T  16322511 ttccattcca 16322502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 35135219 - 35135292
Alignment:
Q  122 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg 195  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||||| ||||||||||||    
T  35135219 ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaagg 35135292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 40328325 - 40328252
Alignment:
Q  122 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg 195  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||||| ||||||||||||    
T  40328325 ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaagg 40328252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 3779048 - 3779121
Alignment:
Q  122 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg 195  Q
    |||||||| || ||||||||||||||||| |||| ||| |||||||| || || ||||||| ||||||||||||    
T  3779048 ttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaagg 3779121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 573342 - 573266
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg 195  Q
    ||||| ||||||||||||||||| || ||||| || | |||||||||||||| ||||||||| ||||| || |||||    
T  573342 agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaagg 573266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
Q  114 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 200  Q
    ||||||||||||||||||| || || || |||||||| || |  || |||||||| |||||||||||||  ||||||||||| ||||    
T  42403209 ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca 42403295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 264
Target Start/End: Complemental strand, 177649 - 177504
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 218  Q
    |||||||||||||| | |||||| || ||||| ||||| || ||||||||||  || ||||||| |||||||| ||| ||| | ||||| || |||||||    
T  177649 agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa 177550  T
Q  219 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgat 264  Q
    | | |||| |  | | |||||  || |||||||||||||| |||||    
T  177549 gaacagagaatgttgaagaagtgacacaatgcatgatgagtttgat 177504  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 19265551 - 19265490
Alignment:
Q  134 aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg 195  Q
    ||||||||||||||||| |||| ||| |||||||| || || ||||||| ||||||||||||    
T  19265551 aggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaagg 19265490  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 35062956 - 35063007
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtc 170  Q
    ||||||||||| ||||||||||||||||| ||||| |  |||||||||||||    
T  35062956 agcttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtc 35063007  T

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Target: scaffold0036 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 209
Target Start/End: Complemental strand, 76072 - 75967
Alignment:
Q  104 ttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaact 203  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||| ||||||||| |  |||| ||    
T  76072 ttgatagcaacagagagcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagct 75973  T
Q  204 tgttcc 209  Q
    ||||||    
T  75972 tgttcc 75967  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 218  Q
    |||||||||||||||| |||||| | ||| || || | ||| || ||||| |||||||||||||||||||||||||| |||||||||||||| || ||||    
T  32874457 agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa 32874556  T
Q  219 gtataga 225  Q
    | |||||    
T  32874557 ggataga 32874563  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 269
Target Start/End: Complemental strand, 7817285 - 7817135
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 218  Q
    ||||||||||||||||| |||||||| ||||| || || || ||||| |||| ||| ||||||| |||||||||||  || |  |||||||| ||||| |    
T  7817285 agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattccata 7817186  T
Q  219 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
      ||||||||  | |  || | ||| |||||||||||||||||||| ||||    
T  7817185 aaatagagtagttggaggatgatacacaatgcatgatgagcttgattgtga 7817135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 216
Target Start/End: Original strand, 6641008 - 6641110
Alignment:
Q  114 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgtt 213  Q
    ||||||| ||||||||||| |  ||||| || || || || | ||||||||||| ||||||||||||||  ||||||||||| | ||  ||||| |||||    
T  6641008 ctgaaagtttttccatgcacataatgaagaggtagggagagagcggatcaccttttcggaggccatgagtgggcttgaaaggggacattttgtttccgtt 6641107  T
Q  214 cca 216  Q
    |||    
T  6641108 cca 6641110  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 269
Target Start/End: Original strand, 54477407 - 54477554
Alignment:
Q  122 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagta 221  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| | |||||||||||  || | |||||| || |||||||| |    
T  54477407 ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaagga 54477506  T
Q  222 tagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
    || ||||  | |  || |  || |||||||||||||||||||||||||    
T  54477507 taaagtattttgatgatgaaacacaatgcatgatgagcttgatggtga 54477554  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 268
Target Start/End: Original strand, 46784469 - 46784621
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 215  Q
    ||||| |||| ||||||||||||||| || || || || |  |||||||||||||  |||||||||| ||| |||||||||||||| || || || ||||    
T  46784469 gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattcc 46784568  T
Q  216 aaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtg 268  Q
    |||| |  ||| || | |  || |  || ||||||||||||||||||||||||    
T  46784569 aaaggacggagaaagttgatgacgtaacacaatgcatgatgagcttgatggtg 46784621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 3881868 - 3881787
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 200  Q
    ||||||||||| ||||| ||||| || ||| | || | |||||||||||||||||||||||| | ||| |||||| ||||||    
T  3881868 agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggca 3881787  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 24990660 - 24990760
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 215  Q
    |||||||| ||||||||||| |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| |||||||    
T  24990660 gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggcattttgttaccgttcc 24990759  T
Q  216 a 216  Q
    |    
T  24990760 a 24990760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 269
Target Start/End: Original strand, 24893833 - 24893986
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 215  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| || ||||    
T  24893833 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcc 24893932  T
Q  216 aaagtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatggtga 269  Q
    | | ||| ||| ||   |||| || | || |||||||||||||||||||||||||    
T  24893933 ataatatggag-aatgtggaggaggtgacacaatgcatgatgagcttgatggtga 24893986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 13599752 - 13599639
Alignment:
Q  103 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaac 202  Q
    |||||| ||||||||||| |||||||| || | |||||| |||||||| || |  ||||||||||| |||||  |||||| |||||||||  |||| |||    
T  13599752 gttgatggcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaac 13599653  T
Q  203 ttgttcccgttcca 216  Q
    ||||| || |||||    
T  13599652 ttgttaccattcca 13599639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 27852952 - 27853059
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 218  Q
    ||||||||||| ||||||||||| |  ||||| || || || || |||||||  || |||||||||||||||||||  ||||  ||||| ||||||||||    
T  27852952 agcttttccatacaaaggatgaataagtaaggagataaagggtccccttgtcttagaccatgagaaggcttgaaagaaggcattttgtttccgttccaaa 27853051  T
Q  219 gtatagag 226  Q
    | ||||||    
T  27853052 gaatagag 27853059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 216
Target Start/End: Original strand, 16769946 - 16770059
Alignment:
Q  103 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaac 202  Q
    |||||| || ||||| || |||||||| || | |||||| |||||||| || |  |||||||||||||| || ||||||| ||| |||||| |||||||     
T  16769946 gttgatggctgctgagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaat 16770045  T
Q  203 ttgttcccgttcca 216  Q
    ||||| || |||||    
T  16770046 ttgttaccattcca 16770059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 216
Target Start/End: Original strand, 27781614 - 27781727
Alignment:
Q  103 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaac 202  Q
    |||||||||| |  ||||||| |||||||| |||||||| || ||||| || |  || |||||||||| |||||||||||  ||||| || || ||||      
T  27781614 gttgatagcaaccaaaagcttctccatgcagaggatgaagaggtaaggtgaaagagggtcaccttgtctgaggccatgagttggcttaaatggaggcatt 27781713  T
Q  203 ttgttcccgttcca 216  Q
    ||||||||||||||    
T  27781714 ttgttcccgttcca 27781727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 1353794 - 1353864
Alignment:
Q  122 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaa 192  Q
    |||||||| ||||| ||||||||||| || || |  ||||||||||||  ||||||||||| |||||||||    
T  1353794 ttttccatacaaagaatgaaaagatatggtgagagtggatcaccttgtatgaggccatgagtaggcttgaa 1353864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 264
Target Start/End: Original strand, 1579159 - 1579304
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 218  Q
    ||||||||||||||||| || || || |||||||| | ||||||||| |||| ||| ||||||| ||| |  || || ||||||||||| |  ||| | |    
T  1579159 agcttttccatgcaaagaataaagaggtaaggggagagcggatcaccctgtctgagcccatgagtaggatgaaagggaggcaacttgtttctattctaga 1579258  T
Q  219 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgat 264  Q
    | |||||| || | | |||||  || |||||||||||||| |||||    
T  1579259 gaatagagaaagttgaagaagaaacacaatgcatgatgagattgat 1579304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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