View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_16 (Length: 436)
Name: NF11280A_low_16
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 6 - 432
Target Start/End: Original strand, 41357123 - 41357557
Alignment:
| Q |
6 |
acaaagtggcgtcaaatagcggtatagcggagttatagcattatagcatagtggagtttgaatttactgctagttttcgtgatctgtgattgaaaatatt |
105 |
Q |
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| T |
41357123 |
acaaagtggcgtcaaatagcggtatagcggagttatagcattatagcatagtggagtttgaatttactgctagttttcgtgatctgtgattgaaaatatt |
41357222 |
T |
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| Q |
106 |
aattcaaactaatggagattcttgtttatctgattacaggagcgcaggatcatggatctatccgaggctaagttttttgtgaattctcttcgttccacat |
205 |
Q |
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| T |
41357223 |
aattcaaactaatggagattcttgtttatctgattacaggagcgcaggatcatggatctatccgaggctaagttttttgtgaattctcttcgttccacat |
41357322 |
T |
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| Q |
206 |
tgacatttctagaggttagtttgcgttgttcaattgtttacattctagctatgtgcttatttaacatcgtatg--------atgaatgacatatgaagca |
297 |
Q |
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| T |
41357323 |
tgacatttctagaggttagtttgcgttgttcaattgtttacattctagctatgtgcttatttaacatcatatgatgaatgaatgaatgacatatgaagca |
41357422 |
T |
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| Q |
298 |
tcatgctatgctatagagatctttagatattttcacaacctattattgtttgaagggattggcgatttagctcatgagctaacctttcatattcattttc |
397 |
Q |
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| T |
41357423 |
tcatgctatgctatagagatctttagatattttcacaacctattattgtttgaagggattggcgatttagctcatgagctaacctttcatattcattttc |
41357522 |
T |
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| Q |
398 |
tgtgtctgtgcttacttttcccatatttttcgaca |
432 |
Q |
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| T |
41357523 |
tgtgtctgtgcttacttttcccatttttgtcgaca |
41357557 |
T |
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