View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_160 (Length: 266)
Name: NF11280A_low_160
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_160 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 30098790 - 30098536
Alignment:
| Q |
12 |
gttacacattgaggtattgaattcttggccagtttcacatgttcctttccatttgtttggaattttctttgtcatgccatcatctttaaagctttgactc |
111 |
Q |
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| T |
30098790 |
gttacacattgaggtattgaattcttggccagtttcacatgttcctttccatttgtttggaattttctttgtcatgccatcatctttaaagctttgactc |
30098691 |
T |
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| Q |
112 |
tcaggccacacaccagtatcaataacaccaacaacgacatcgtctccaaaatctgaagtataccatagtccatttggagaatctagtgaaagaaattcaa |
211 |
Q |
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| T |
30098690 |
tcaggccacaaaccagtatcaataacaccaacaacgacatcgtctccaaaatctgaagtatgccatagtccacttggagaatctagtgaaagaaattcaa |
30098591 |
T |
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| Q |
212 |
aggtatgagttgtgtcaatggtagctgttctatcttgatatgctgcaacaaagcc |
266 |
Q |
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| T |
30098590 |
aggtatgagttgtgtcaatggtagcagttctatcttgatatgctgaaacaaagcc |
30098536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 30088128 - 30088372
Alignment:
| Q |
22 |
gaggtattgaattcttggccagtttcacatgttcctttccatttgtttggaattttctttgtcatgccatcatctttaaagctttgactctcaggccaca |
121 |
Q |
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| T |
30088128 |
gaggcattgaatttatggccagtttcacatgttcctttccatttgtttggaattttctttgtcatgccatcatctttaaagctttgactctcaggccaca |
30088227 |
T |
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| Q |
122 |
caccagtatcaataacaccaacaacgacatcgtctccaaaatctgaagtataccatagtccatttggagaatctagtgaaagaaattcaaaggtatgagt |
221 |
Q |
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| T |
30088228 |
caccagaatctataacaccaacaatgatgtcatctccaaaatttgaagcatgccatagaccacttggagaatctagggagagaaattcaaaggtgtgagt |
30088327 |
T |
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| Q |
222 |
tgtgtcaatggtagctgttctatcttgatatgctgcaacaaagcc |
266 |
Q |
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| T |
30088328 |
tgtgtcaatggttgctgttctatcttgatatgctgaaacaaagcc |
30088372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 30092080 - 30092330
Alignment:
| Q |
16 |
cacattgaggtattgaattcttggccagtttcacatgttcctttccatttgtttggaattttctttgtcatgccatcatctttaaagctttgactctcag |
115 |
Q |
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| T |
30092080 |
cacatggaggcattgaatttatggccagtttcacatgttcctttccatttgttcggaattttctttgtcatgccgtcatctttaaagctttgactctcag |
30092179 |
T |
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| Q |
116 |
gccacacaccagtatcaataacaccaacaacgacatcgtctccaaaatctgaagtataccatagtccatttggagaatctagtgaaagaaattcaaaggt |
215 |
Q |
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| T |
30092180 |
gccatacaccagagtcaataacaccaataatgatatcgtctccgaaatttgaagcatgccatagaccacttggagaatctagggagagaaattcaaaggt |
30092279 |
T |
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| Q |
216 |
atgagttgtgtcaatggtagctgttctatcttgatatgctgcaacaaagcc |
266 |
Q |
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| T |
30092280 |
gtgagttgtgtccatggttgctgttctgtcttgatatgctgcaacaaagcc |
30092330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 35171705 - 35171935
Alignment:
| Q |
12 |
gttacacattgaggtattgaattcttggccagtttcacatgttcctttccatttgtttggaattttctttgtcatgccatcatctttaaagctttgactc |
111 |
Q |
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| T |
35171705 |
gttacacatagaagtgttgaaatcttgtcctgcttgacattttcctttccattttgttgggatgtttttcgacatgccatcgtctttaaagctttcactt |
35171804 |
T |
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| Q |
112 |
tcaggccacacaccagtatcaataacaccaacaacgacatcgtctccaaaatctgaagtataccatagtccatttggagaatctagtgaaagaaattcaa |
211 |
Q |
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|||||||| |||||| | |||||||||||||||| |||| ||||| |||| ||| | || ||||||||| || | || |||| ||||||||| |||| |
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| T |
35171805 |
tcaggccaaacaccactgtcaataacaccaacaataacattttctcctaaatttgatgcattccatagtcctttggaagggtctaatgaaagaaactcaa |
35171904 |
T |
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| Q |
212 |
aggtatgagttgtgtcaatggtagctgttct |
242 |
Q |
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| T |
35171905 |
aggtgtgtgttgtgtctattgttgctgttct |
35171935 |
T |
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