View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_163 (Length: 264)
Name: NF11280A_low_163
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_163 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 39695350 - 39695097
Alignment:
| Q |
5 |
ccaagaatattcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaa |
104 |
Q |
| |
|
||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39695350 |
ccaagaacagtcaacacatgtcctgctcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaa |
39695251 |
T |
|
| Q |
105 |
atgtgaggaaaatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttg |
204 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39695250 |
atgtgaggaaaatgggtgctgatatcaagactataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttg |
39695151 |
T |
|
| Q |
205 |
aagtacaaccaagctactttggattgctattggagttgctaagaatatacttga |
258 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39695150 |
aagtacaaccaagcaactttggattgctattggagttgctaagaatatacttga |
39695097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 39934765 - 39935018
Alignment:
| Q |
5 |
ccaagaatattcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaa |
104 |
Q |
| |
|
||||||| | |||||||||||||| |||||||||| |||||||||||| | ||| | ||||| ||||||||||| ||| || ||||| |||||||||| |
|
|
| T |
39934765 |
ccaagaacagtcaacacatgtcctgctcctattcgctggagcggcataagtgatttgccggtaatcttatgccaacatggcaagagcaccctgtcaagaa |
39934864 |
T |
|
| Q |
105 |
atgtgaggaaaatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttg |
204 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
39934865 |
aagtgagaaaaatgggtgctgatattaagacaataacagaaacaaaactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttg |
39934964 |
T |
|
| Q |
205 |
aagtacaaccaagctactttggattgctattggagttgctaagaatatacttga |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
39934965 |
aagtacaaccaagctactttggattgctattggagttgataggaatatacttga |
39935018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 39704262 - 39704009
Alignment:
| Q |
5 |
ccaagaatattcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaa |
104 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||| || ||||||||| |||| | |||| ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
39704262 |
ccaagaacagtcaacacatgtcctactcctattcgttgaagtggcataggcgtttttccagtaatcttatgccaacatggcaatagcactctgtcaagaa |
39704163 |
T |
|
| Q |
105 |
atgtgaggaaaatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttg |
204 |
Q |
| |
|
| ||||||||||||| || |||||||| ||| |||||||||||||||| |||||| ||||| ||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
39704162 |
aggtgaggaaaatggatgttgatattatgactataacagaaacagaaccagctggaattttgaaatggggtcctaatgagcgatccatggctaaagcttg |
39704063 |
T |
|
| Q |
205 |
aagtacaaccaagctactttggattgctattggagttgctaagaatatacttga |
258 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39704062 |
aagtaccgtcacactactttggattgctattggagttgctaagaatatacttga |
39704009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 39929113 - 39929317
Alignment:
| Q |
5 |
ccaagaatattcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaa |
104 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| | |||||| || |||| ||| ||||||||||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
39929113 |
ccaagaacattgaacacatgtcctactcctatttgatggagcagcttaggagattttctggtaaccttatgccaacttggcaatagcaccctgtcaagaa |
39929212 |
T |
|
| Q |
105 |
atgtgaggaaaatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttg |
204 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
39929213 |
aagtgaggaaaatgggtgctgatattaagactataacagaaatagaaccagctgggatttcaaaatggtatcctaaagaacgatccatgactaaagcttg |
39929312 |
T |
|
| Q |
205 |
aagta |
209 |
Q |
| |
|
||||| |
|
|
| T |
39929313 |
aagta |
39929317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 38061800 - 38062001
Alignment:
| Q |
15 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcct-ggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgagga |
113 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||| | ||| | | ||| ||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
38061800 |
tcaacacatagcctactcctattcgttggagcggcataggcttttttttcggttatcgtattccaacctggcaataacactctgtcaagaaaggtgagga |
38061899 |
T |
|
| Q |
114 |
aaatgggtgctgatattaagac---aataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtac |
210 |
Q |
| |
|
|||| | || ||||||||| || ||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||| |||| |||||||||| |
|
|
| T |
38061900 |
aaatagatgttgatattaacactataataacagaaacagaaccagctgggattttaaaatgagatcctacagaacgatccatgattaaatcttgaagtac |
38061999 |
T |
|
| Q |
211 |
aa |
212 |
Q |
| |
|
|| |
|
|
| T |
38062000 |
aa |
38062001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University