View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_166 (Length: 263)
Name: NF11280A_low_166
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_166 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 24 - 263
Target Start/End: Complemental strand, 43411010 - 43410764
Alignment:
| Q |
24 |
acagacagacacaacacattcagatga---gaagttgtaagctagctag----gaggatggactgctgctgctgctgttgcggaaagtgtttggaagatt |
116 |
Q |
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| T |
43411010 |
acagacagacacaacacattcagatgatcagaagttgtaagctagctagctaggaggatggactgctgctgctgctgttgcggaaagtgtttggaagatt |
43410911 |
T |
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| Q |
117 |
gagaggggaagcttgaaaaagagagagtctaatggtacgtgtgtgagatgatgtgtgcaagtctttacattcttcaagatcagcatcacatgataacaca |
216 |
Q |
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| T |
43410910 |
gagaggggaagcttgaaaaagagagagtctaatggtacgtgtgtgagatgatgtgtgcaagtctttacattcttcaagatcagcatcacatgataacaca |
43410811 |
T |
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| Q |
217 |
acccattctccttcatcatccaaatattttagaaccaagttgttcat |
263 |
Q |
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| T |
43410810 |
acccattctccttcatcatccaaatattttagaaccaagttgttcat |
43410764 |
T |
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