View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11280A_low_168 (Length: 260)

Name: NF11280A_low_168
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11280A_low_168
NF11280A_low_168
[»] chr7 (12 HSPs)
chr7 (7-254)||(4845298-4845545)
chr7 (7-204)||(4711370-4711567)
chr7 (15-253)||(4654059-4654297)
chr7 (16-254)||(4864487-4864725)
chr7 (9-218)||(4783120-4783332)
chr7 (9-196)||(4663310-4663497)
chr7 (40-218)||(4644293-4644471)
chr7 (9-218)||(4815549-4815761)
chr7 (9-254)||(4696466-4696723)
chr7 (9-246)||(4673273-4673510)
chr7 (9-253)||(4637420-4637661)
chr7 (86-216)||(4667538-4667668)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 4845298 - 4845545
Alignment:
Q  7 ccaatatccaaattccattcacaaccgcgcatatctctttctcaaatttcacatactcattttctagcattcctagttcccctgtttttattcgccttca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4845298 ccaatatccaaattccattcacaaccgcgcatatctctttctcaaatttcacatactcattttctagcattcctagttcccctgtttttattcgccttca 4845397  T
Q  107 tttttacccaacttcataccagaactttgatcccttcaatgctcttttctctgtcgaagtaaacaacaatcttacccttcttaaaaacttcagcccttca 206  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4845398 tttttacccaacttcataccagaactttgatccctccaatgctcttttctctgtcgaagtaaacaacaatcttacccttcttaaaaacttcagcccttca 4845497  T
Q  207 ctttggcttcatgacgaggtggaaaaaattaccaaagaatattgcatt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4845498 ctttggcttcatgacgaggtggaaaaaattaccaaagaatattgcatt 4845545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 4711370 - 4711567
Alignment:
Q  7 ccaatatccaaattccattcacaaccgcgcatatctctttctcaaatttcacatactcattttctagcattcctagttcccctgtttttattcgccttca 106  Q
    |||||||| | |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||  |||   |||||||||||||| |||||||    
T  4711370 ccaatatcgatattccactcacaaccgcgcgtatctctctctcaaatttcacatactcattttctagcatcactaacacccctgtttttattagccttca 4711469  T
Q  107 tttttacccaacttcataccagaactttgatcccttcaatgctcttttctctgtcgaagtaaacaacaatcttacccttcttaaaaacttcagccctt 204  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4711470 tttttacccaacttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt 4711567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 4654297 - 4654059
Alignment:
Q  15 caaattccattcacaaccgcgcatatctctttctcaaatttcacatactcattttctagcattcctagttcccctgtttttattcgccttcatttttacc 114  Q
    |||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||| |||  ||| ||||||||||||||  ||||||||||||||||    
T  4654297 caaattccattcacaaccgcacgtatctctctctcatatttcacatactcattttctaacatcactacttcccctgtttttaaccgccttcatttttacc 4654198  T
Q  115 caacttcataccagaactttgatcccttcaatgctcttttctctgtcgaagtaaacaacaatcttacccttcttaaaaacttcagcccttcactttggct 214  Q
    | ||||| || || || ||||| ||||  ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||  |||||||||||| |    
T  4654197 ctacttcgtatcaaaaatttgaaccctcaaatgcacttttctctgttgaagtaaacaacaaacttacacttcttaaaaacttcaatccttcactttggat 4654098  T
Q  215 tcatgacgaggtggaaaaaattaccaaagaatattgcat 253  Q
    |||||| || | ||||| ||| |||||||||||||||||    
T  4654097 tcatgatgatggggaaacaatcaccaaagaatattgcat 4654059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 4864725 - 4864487
Alignment:
Q  16 aaattccattcacaaccgcgcatatctctttctcaaatttcacatactcattttctagcattcctagttcccctgtttttattcgccttcatttttaccc 115  Q
    ||||||||| ||||||||||| ||||||| |||||| ||||||||| |||||||||| |||  ||||||| ||||||||| |||| ||||||||||||||    
T  4864725 aaattccatacacaaccgcgcgtatctctctctcaagtttcacatattcattttctaccatcactagttcgcctgtttttgttcgtcttcatttttaccc 4864626  T
Q  116 aacttcataccagaactttgatcccttcaatgctcttttctctgtcgaagtaaacaacaatcttacccttcttaaaaacttcagcccttcactttggctt 215  Q
    ||| || || || |||||||| || |  || ||  |||| || || ||||||||||||||  ||||||||||||||||||||| ||||||||||||| ||    
T  4864625 aacatcttatcaaaactttgaaccttcgaaagcatttttttcagttgaagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggatt 4864526  T
Q  216 catgacgaggtggaaaaaattaccaaagaatattgcatt 254  Q
    ||||| || | ||||||||| ||||||||||||||||||    
T  4864525 catgaagatggggaaaaaatcaccaaagaatattgcatt 4864487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 4783120 - 4783332
Alignment:
Q  9 aatatccaaattccattcacaaccgcgcatatctctttctcaaatttcacatactcattttctagcat--tc-ctagttcccctgtttttattcgccttc 105  Q
    |||||||||||||||||||||||||  | |  |||| ||||||||||||||||||||||||||| |||  || |||  ||| || ||||| |||||||||    
T  4783120 aatatccaaattccattcacaaccgtacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgccttc 4783219  T
Q  106 atttttacccaacttcataccagaactttgatcccttcaatgctcttttctctgtcgaagtaaacaacaatcttacccttcttaaaaacttcagcccttc 205  Q
    ||||||||||||||||||| || || |||||  |||   |||| ||||||||||| ||||||||||||||  ||||||||||||||||||||| ||||||    
T  4783220 atttttacccaacttcatatcaaaattttgaaacctcttatgcacttttctctgttgaagtaaacaacaacattacccttcttaaaaacttcaacccttc 4783319  T
Q  206 actttggcttcat 218  Q
    |||||||||||||    
T  4783320 actttggcttcat 4783332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 4663497 - 4663310
Alignment:
Q  9 aatatccaaattccattcacaaccgcgcatatctctttctcaaatttcacatactcattttctagcattcctagttcccctgtttttattcgccttcatt 108  Q
    ||||||| ||||||| ||| |||||| | ||||||  ||||||||||||||||||||||| ||| ||| ||||||| |||||||||| ||||||||||||    
T  4663497 aatatcccaattccactcaaaaccgcacgtatctcgctctcaaatttcacatactcatttcctaccatccctagttgccctgtttttcttcgccttcatt 4663398  T
Q  109 tttacccaacttcataccagaactttgatcccttcaatgctcttttctctgtcgaagtaaacaacaatcttacccttcttaaaaactt 196  Q
    ||||| |||| || ||  | |||||||| |||| |||||| |||||||||||| || ||||| |||||||||||||||||||||||||    
T  4663397 tttactcaacatcttataaaaactttgaaccctccaatgcacttttctctgtcaaactaaacgacaatcttacccttcttaaaaactt 4663310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 4644471 - 4644293
Alignment:
Q  40 tctctttctcaaatttcacatactcattttctagcattcctagttcccctgtttttattcgccttcatttttacccaacttcataccagaactttgatcc 139  Q
    |||||||||||||||| ||||||||||||||||||||  ||  ||||||||||||| |||||||| ||||||||||  | || || || || ||||| ||    
T  4644471 tctctttctcaaattttacatactcattttctagcatcactgtttcccctgtttttcttcgcctttatttttaccctgcatcgtatcaaaattttgaacc 4644372  T
Q  140 cttcaatgctcttttctctgtcgaagtaaacaacaatcttacccttcttaaaaacttcagcccttcactttggcttcat 218  Q
    ||  ||||| |||||||||||| |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  4644371 ctcaaatgcacttttctctgtcaaagtaaacaacaatctcacccttcttcaaaacttcaacccttcactttggcttcat 4644293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 4815549 - 4815761
Alignment:
Q  9 aatatccaaattccattcacaaccgcgcatatctctttctcaaatttcacatactcattttctagcat--tc-ctagttcccctgtttttattcgccttc 105  Q
    |||| ||||||||||||||||||||  | |  |||| ||||||||||||||||||||||||||| |||  || |||  ||| || ||||| |||||||||    
T  4815549 aatacccaaattccattcacaaccggacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgccttc 4815648  T
Q  106 atttttacccaacttcataccagaactttgatcccttcaatgctcttttctctgtcgaagtaaacaacaatcttacccttcttaaaaacttcagcccttc 205  Q
    ||||||||||||||||||| || || |||||  |||   |||| ||||||||||| ||||||||||||||  ||||||||||||||||||||| ||||||    
T  4815649 atttttacccaacttcatatcaaaattttgaaacctcttatgcacttttctctgttgaagtaaacaacaacattacccttcttaaaaacttcaacccttc 4815748  T
Q  206 actttggcttcat 218  Q
    |||||||||||||    
T  4815749 actttggcttcat 4815761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 4696466 - 4696723
Alignment:
Q  9 aatatccaaattccattcacaaccgcgcatatctctttctcaaatttcacatactcattttctagcattcctagttcccctgtttttattcgccttcatt 108  Q
    |||||||||||||||||||||||||| | | ||||| ||||||||||||||||||| ||| |||||||  ||| ||||||||||||| ||||||||||||    
T  4696466 aatatccaaattccattcacaaccgcacgtgtctctctctcaaatttcacatactcttttcctagcatcactacttcccctgtttttcttcgccttcatt 4696565  T
Q  109 tttacccaacttcataccagaactttga----------tccctt--caatgctcttttctctgtcgaagtaaacaacaatcttacccttcttaaaaactt 196  Q
    ||||||| ||||| ||||  ||||||||          ||||||   ||||| |||||||||||  |||||||||||||  |||||||||||||||||||    
T  4696566 tttacccgacttcgtaccgaaactttgaaccttctaattccctttcaaatgcacttttctctgttaaagtaaacaacaacgttacccttcttaaaaactt 4696665  T
Q  197 cagcccttcactttggcttcatgacgaggtggaaaaaattaccaaagaatattgcatt 254  Q
    || |||||| |||||| |  || | || |  |||||||| ||||||||||||||||||    
T  4696666 caacccttctctttggttctatcatgatgacgaaaaaatcaccaaagaatattgcatt 4696723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 4673510 - 4673273
Alignment:
Q  9 aatatccaaattccattcacaaccgcgcatatctctttctcaaatttcacatactcattttctagcattcctagttcccctgtttttattcgccttcatt 108  Q
    ||||||||| |||||| ||||  ||| | | | ||| |||||||||||||||||||||||||||||||  ||| |||| |||||||| ||||||||||||    
T  4673510 aatatccaagttccatacacacacgcacgtgtttctctctcaaatttcacatactcattttctagcatcactaattccactgtttttcttcgccttcatt 4673411  T
Q  109 tttacccaacttcataccagaactttgatcccttcaatgctcttttctctgtcgaagtaaacaacaatcttacccttcttaaaaacttcagcccttcact 208  Q
    ||||||||| || ||   | | ||||||||||| ||||||  |||||||| || |||| ||||||||| ||||||||||||||||||||| |||||  ||    
T  4673410 tttacccaaatttatctaaaagctttgatccctccaatgcaattttctctatcaaagttaacaacaatattacccttcttaaaaacttcaaccctttcct 4673311  T
Q  209 ttggcttcatgacgaggtggaaaaaattaccaaagaat 246  Q
    |||| |||||||  | | ||||| ||| ||||||||||    
T  4673310 ttggattcatgattatgaggaaacaatcaccaaagaat 4673273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 4637661 - 4637420
Alignment:
Q  9 aatatccaaattccattcacaaccgcgcatatctctttctcaaatttcacatactcattttctagcattcctagttcccctgtttttattcgccttcatt 108  Q
    ||||||||| |||||| ||||  ||| | | | ||| |||||||||||||||||||||||||||||||  ||| |||| |||||||| |||| |||||||    
T  4637661 aatatccaagttccatacacacacgcacgtgtttctctctcaaatttcacatactcattttctagcatcactaattccactgtttttcttcgtcttcatt 4637562  T
Q  109 tttacccaacttcataccagaactttgatcccttcaatgctcttttctctgtcgaagtaaacaacaatcttacccttcttaaaaacttcagcccttcact 208  Q
    ||||||| || || || || |||||||| || | || |||  ||||||||||| |||| ||| ||   |||||||||||||||||||||| |||||  ||    
T  4637561 tttaccctacatcttatcaaaactttgaaccttccagtgcaattttctctgtcaaagtgaacgac---cttacccttcttaaaaacttcaaccctttgct 4637465  T
Q  209 ttggcttcatgacgaggtggaaaaaattaccaaagaatattgcat 253  Q
    ||||||  ||   || |  |||||||| |||||||||||||||||    
T  4637464 ttggctctattttgatgacgaaaaaatcaccaaagaatattgcat 4637420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 4667668 - 4667538
Alignment:
Q  86 ccctgtttttattcgccttcatttttacccaacttcataccagaactttgatcccttcaatgctcttttctctgtcgaagtaaacaacaatcttaccctt 185  Q
    |||||||||| ||||||| |||||||||||||| || || || ||||||||  ||| ||| ||||| ||| | ||| |||||   | ||| |||||||||    
T  4667668 ccctgtttttcttcgcctccatttttacccaacatcgtatcaaaactttgaaacctccaacgctctcttcacagtcaaagtaggaaccaaccttaccctt 4667569  T
Q  186 cttaaaaacttcagcccttcactttggcttc 216  Q
    || ||| |||| |||||||||||||||||||    
T  4667568 ctcaaagactttagcccttcactttggcttc 4667538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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