View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_17 (Length: 431)
Name: NF11280A_low_17
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 7 - 423
Target Start/End: Original strand, 40605897 - 40606312
Alignment:
| Q |
7 |
aaatttacatgataatattaccatattttgaaagaacaaatgaattcttgaggttctgtgcatttaaactccctcacaagtcacaacaaccaagtgcagt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40605897 |
aaatttacatgataatattaccatattttgaaagaacaaatgaattcttgaggttctgtgcatttaaactccctcacaagtcccaacaaccaagtgcagt |
40605996 |
T |
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| Q |
107 |
tgtatatattattattggaaccaatattcgccaacaaatctggggcatatactccctacggcctattgcaacttgcaagctattctattctaactcagct |
206 |
Q |
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| T |
40605997 |
tgtatatattattattggaaccaatattcgccaacaaatctggggca-atactccctacggcctattgcaacttgcaagctattctattctaactcagct |
40606095 |
T |
|
| Q |
207 |
gcacaaccaggccctgtatatgtaaattgtaaaggcaataatttagttgctccaaacggcagctcttggtgagtggtgactggtggcagctcactaattt |
306 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40606096 |
gcacaaccaggccctgtatttgtaaattgtaaaggcaataatttacttgctccagacggcagctcttggtgagtggtgactagtggcagctcactaattt |
40606195 |
T |
|
| Q |
307 |
acatgcgtggttggttttacggccgtgataataattgattttgaatgcgaaatgaattggctttataaaaagtaatttaaatttattgaaaaaataaata |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40606196 |
acatgcgtggttggttttacggccgtgataataattgattttgaatgcgaaatgaattggctttataaaaagtaatttaaatttattgaaaaaataaata |
40606295 |
T |
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| Q |
407 |
gtagcacggtaacacca |
423 |
Q |
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| T |
40606296 |
gtagcacggtaacacca |
40606312 |
T |
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