View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_173 (Length: 259)
Name: NF11280A_low_173
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_173 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 1954203 - 1954418
Alignment:
| Q |
18 |
gatagtcttgcctaatattattcaaaattatgatcttttttacctatagacaatattcagggtgtaaatgttcgacacctacaattttgaagggcaaatt |
117 |
Q |
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| T |
1954203 |
gatagtcttgcctaatattattcaaaattatgatct-----acctatagacaaaatttaaggtgtaaatgtccgacgcctacaattttgaagggcaaatt |
1954297 |
T |
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| Q |
118 |
gatgatctactcataatatatctatcaaatgttctacattcactccattatgttatatgtaacaccaaagaatacacaaaatacaaatacaaacttggac |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1954298 |
gatgatttactcataatatatctatcaaatgttctacattcactccattatgttatatgtaacaccaaagaatacacaaaatacaaatacaaactttgac |
1954397 |
T |
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| Q |
218 |
actttatatacattgaggatt |
238 |
Q |
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||||||||||||||||||||| |
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| T |
1954398 |
actttatatacattgaggatt |
1954418 |
T |
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