View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11280A_low_174 (Length: 258)
Name: NF11280A_low_174
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_174 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 13945147 - 13945387
Alignment:
| Q |
6 |
agaaggaaactctctttaaacctaaatttgagggaggtttaagtttcaaaaacttaaggatgttcaacgaagcaatgctagcaaaataagtttggagact |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13945147 |
agaaggaaactctctttaaacctaaatttgagggaggtttaggtttcaaaaacttaaggatgttcaacgaagcaatgctagcaaaataagtttggagact |
13945246 |
T |
|
| Q |
106 |
ccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgatgtcattcatagcagattaggatcacaaccaagctgc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13945247 |
ccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgatgtcattcatagcagattaggatcacaaccaagctac |
13945346 |
T |
|
| Q |
206 |
acttggagaagcatccatcattctaaatattgaaaaatatt |
246 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13945347 |
acttggagaaccatccatcattctaaatattgaaaaatatt |
13945387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 14086336 - 14086576
Alignment:
| Q |
6 |
agaaggaaactctctttaaacctaaatttgagggaggtttaagtttcaaaaacttaaggatgttcaacgaagcaatgctagcaaaataagtttggagact |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14086336 |
agaaggaaactctctttaaacctaaatttgagggaggtttaggtttcaaaaacttaaggatgttcaacgaagcaatgctagcaaaataagtttggagact |
14086435 |
T |
|
| Q |
106 |
ccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgatgtcattcatagcagattaggatcacaaccaagctgc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14086436 |
ccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgatgtcattcatagcagattaggatcacaaccaagctac |
14086535 |
T |
|
| Q |
206 |
acttggagaagcatccatcattctaaatattgaaaaatatt |
246 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14086536 |
acttggagaaccatccatcattctaaatattgaaaaatatt |
14086576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University