View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_175 (Length: 257)
Name: NF11280A_low_175
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_175 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 21 - 252
Target Start/End: Original strand, 1831613 - 1831845
Alignment:
| Q |
21 |
aaaatttcgaaagacaaatgatgagagaatttgagatggaagatttgagaaagttaaaatatttccttgggatggaattcactaaaacttcataatgttt |
120 |
Q |
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|||| ||| ||||||||||||||| ||||||||||||| |||||| ||||||||| |||||||| ||| ||||||||||||||||||||| ||||||| |
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| T |
1831613 |
aaaaattcaaaagacaaatgatgacagaatttgagatgactgatttgggaaagttaacatatttccctggaatggaattcactaaaacttcagaatgttt |
1831712 |
T |
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| Q |
121 |
agtggtgcaccagaagaaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacaccatctgaagtg-accttaggtgt |
219 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | | |
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| T |
1831713 |
agtgatgcaccagaagaaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacaccatctgaagtgaatcttaagctt |
1831812 |
T |
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| Q |
220 |
gtaaagaatgaagataaggagctagttgaccct |
252 |
Q |
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| T |
1831813 |
gtaaagaatgaagatgaagagctagttgaccct |
1831845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 198
Target Start/End: Complemental strand, 15490587 - 15490418
Alignment:
| Q |
31 |
aagacaaatgatgagagaatttgagatggaagatttgagaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcac |
130 |
Q |
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|||||||||||||||||||||||| |||| |||||| ||||||||| ||| ||||||| |||||||||| | |||||| | || |||||| | |||| |
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| T |
15490587 |
aagacaaatgatgagagaatttgatatggctgatttgggaaagttaatatacttccttgaaatggaattcaattaaactttaaaaggtttagggatgcat |
15490488 |
T |
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| Q |
131 |
cagaag--aaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacacc |
198 |
Q |
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| T |
15490487 |
cagaagataaacatgttattgatattcttaagagattcaacatgatgagttgcaatcctacatatacacc |
15490418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 16944219 - 16944109
Alignment:
| Q |
30 |
aaagacaaatgatgagagaatttgagatggaagatttgagaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgca |
129 |
Q |
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||||||||||||||| |||||| || ||| ||||| |||||||| ||| |||||||| || ||||||||| |||| ||| | | |||||| |||| |
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| T |
16944219 |
aaagacaaatgatgaaagaattggacatgacttatttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgca |
16944120 |
T |
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| Q |
130 |
ccagaagaaat |
140 |
Q |
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| T |
16944119 |
ccagaagaaat |
16944109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 17014884 - 17014774
Alignment:
| Q |
30 |
aaagacaaatgatgagagaatttgagatggaagatttgagaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgca |
129 |
Q |
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||||||||||||||| |||||| || ||| ||||| |||||||| ||| |||||||| || ||||||||| |||| ||| | | |||||| |||| |
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| T |
17014884 |
aaagacaaatgatgaaagaattggacatgacttatttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgca |
17014785 |
T |
|
| Q |
130 |
ccagaagaaat |
140 |
Q |
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||||||||||| |
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| T |
17014784 |
ccagaagaaat |
17014774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 9816935 - 9817073
Alignment:
| Q |
30 |
aaagacaaatgatgagagaatttgagatggaagatttgagaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgca |
129 |
Q |
| |
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||||||||||||||| ||| ||||| ||| | |||| ||| ||||| ||||||| |||| || |||||||||||||| ||| | | |||||| |||| |
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| T |
9816935 |
aaagacaaatgatgaaagagtttgacatgactggtttgggaaggttaacatatttctttggaatagaattcactaaaacctcaaagggattagtgatgca |
9817034 |
T |
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| Q |
130 |
ccagaagaaatatgctacaaatattttaaagagattcaa |
168 |
Q |
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| T |
9817035 |
ctagaagaaatatgcaatagatattttgaagagattcaa |
9817073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 30065211 - 30065339
Alignment:
| Q |
69 |
gaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaatatgctacaaatattttaaagagattcaa |
168 |
Q |
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||||||||| ||| |||||||| |||||||||||||||||||| || || |||| ||| |||||||| |||||| | ||||| | ||||| ||||| |
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| T |
30065211 |
gaaagttaacatacttccttggtatggaattcactaaaacttctgaaggtctagttaagcatcagaagaagtatgcttctgatattctcaagaggttcaa |
30065310 |
T |
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| Q |
169 |
catgatgggcttcaatcctgcatctacac |
197 |
Q |
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| T |
30065311 |
catgttgaactgcaatcctgcatctacac |
30065339 |
T |
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