View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_178 (Length: 256)
Name: NF11280A_low_178
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_178 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 31025618 - 31025372
Alignment:
| Q |
6 |
acaattaaccctttattttaattctcaatttagaacttttcataaaataaat----gtactaaaagcattcaatcaatttttagtgatgtgagtttgttc |
101 |
Q |
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| T |
31025618 |
acaattaaccctttattttaattctcaatttagaacttttcataaaataaattaatgtactaaaaactttcaatcaatttttagcgatatgagtttgttc |
31025519 |
T |
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| Q |
102 |
agagattcctcatagcaatgttgcatttgatatactaataaatatcgtttaatattagaattttaactaatatttcaatcagtatatgtagttactttta |
201 |
Q |
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| T |
31025518 |
acatattcctcgtagcaatgttgcatttgatatactaataaatatcgtttaatattagaattttaactaatatttgaatcagtatatgtagttactttta |
31025419 |
T |
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| Q |
202 |
ttgacgcaaatatctcttatagatagaacaagaggtgtatattgttc |
248 |
Q |
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| T |
31025418 |
ttgacgcaaatatctcttatagatagaacaagaggagtatgttgttc |
31025372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 31073784 - 31073711
Alignment:
| Q |
8 |
aattaaccctttattttaattctcaatttagaacttttcataaaataaatgtactaaaagcattcaatcaattt |
81 |
Q |
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| T |
31073784 |
aattaaccaattattataattcttaatttataacttttcataaaataaatatgctaaaagcattcaatcaattt |
31073711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 31040751 - 31040719
Alignment:
| Q |
20 |
attttaattctcaatttagaacttttcataaaa |
52 |
Q |
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| T |
31040751 |
attttaattctcaatttagaacttttcataaaa |
31040719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 33533958 - 33533813
Alignment:
| Q |
6 |
acaattaaccctttattttaattctcaatttagaacttttcataaaataaatgtactaaaagcattcaatcaatttttagtgatgtgagtttgttcagag |
105 |
Q |
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|||||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| || | |
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| T |
33533958 |
acaattaaccacatattttaaatttcaatttaggacttttcataaaataaatgtactaaaagcattcaatcaaattttaacgatatgagtttgtacacat |
33533859 |
T |
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| Q |
106 |
attcctcatagcaatgttgcatttgatatactaataaatatcgttt |
151 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
33533858 |
attcatcataaaaatgttgcatttgatatactaataaatatcgttt |
33533813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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