View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_19 (Length: 426)
Name: NF11280A_low_19
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_19 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 58 - 408
Target Start/End: Complemental strand, 337279 - 336929
Alignment:
| Q |
58 |
ttgttcagtaaaatgtttagatatgaatcactcattacagcacatcaaaagcaaatgtagaaatgaaatactagtgtccatacatgcagatccagttaac |
157 |
Q |
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| T |
337279 |
ttgttcagtaaaatgtttagatatgaatcactcactacagcacatcaaaagcaaatgtagaaatgaaatactagtgtccatacatgcagatccagttaac |
337180 |
T |
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| Q |
158 |
atatattattagagtagatcagaattcagaagggataccttatcttttacattcccgaggacaattctataaggagcaattccaggaagatgagggagtt |
257 |
Q |
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| T |
337179 |
atatattattagagtagatcagaattcagaagggataccttatcttttacattcccaaggacaattctataaggagcaattccaggaagatgagggagtt |
337080 |
T |
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| Q |
258 |
ttggctccaaaagcttctgaaaactggatcttcctatttgggattctgcaaacaatctcctttgagcaagaagttgttgattagagttggaagaaggaga |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
337079 |
ttggctccaaaagcttctgaaaactggatcttcctatttgggattctgcaaacaatttcctttgagcaagaagttgttgattagagttggaagaaggaga |
336980 |
T |
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| Q |
358 |
tcgtggaatgctcgctgcacttgttggggatgcataactattggaacttcc |
408 |
Q |
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| T |
336979 |
tcgtggaatgctcgctgcacttgttggagatgcatgactattggaacttcc |
336929 |
T |
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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 42172600 - 42172507
Alignment:
| Q |
192 |
ataccttatcttttacattcccgaggacaattctataaggagcaattccaggaagatgagggagttttggctccaaaagcttctgaaaactgga |
285 |
Q |
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|||||||||| |||||||| || ||||||| |||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||| |
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| T |
42172600 |
ataccttatcctttacatttcccaggacaactctataaggagcaattccaggaagttgagggagctgtggctccaaaagtttctgaaaactgga |
42172507 |
T |
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