View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11280A_low_190 (Length: 251)
Name: NF11280A_low_190
Description: NF11280A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11280A_low_190 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4484963 - 4485199
Alignment:
| Q |
1 |
ttctgcaatgcattttatgtatgtcgtaccattgttagctagtctcaccagaaaaggccatcgattattcatcaacggtggggttatggtaggtgctgca |
100 |
Q |
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| T |
4484963 |
ttctgcaatgcattttatgtatgtcgtaccattgttagctagtctcactagaaaaggccatcgattattcatcaaaggtggggtaatggtaggtgctgca |
4485062 |
T |
|
| Q |
101 |
aaggatatgataggaacttgagctttgtttcctatatcttccattatagctgcttctggccatgtgtgcttatccctataatcacttgcaccttttgcac |
200 |
Q |
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| T |
4485063 |
aaggatatgataggaacttgagctttgcttcctatatcttccattatagctgcttctggccatgtgtgc--atccctataatcacttgcaccttttgcac |
4485160 |
T |
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| Q |
201 |
attaatcatctcttcggctgcaatacacgggctcatatt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
4485161 |
attaatcatctcttcggctgcaatacacgggctcatatt |
4485199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4489130 - 4489366
Alignment:
| Q |
1 |
ttctgcaatgcattttatgtatgtcgtaccattgttagctagtctcaccagaaaaggccatcgattattcatcaacggtggggttatggtaggtgctgca |
100 |
Q |
| |
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|||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||| ||| | |||||| |||||||| |||||||| ||| || |
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| T |
4489130 |
ttctgcaatgcattttatatatgctgtaccagtgttagctagtctcaccagaaaaggccaccgagcttccatcaatggtggggtaatggtaggagctaca |
4489229 |
T |
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| Q |
101 |
aaggatatgataggaacttgagctttgtttcctatatcttccattatagctgcttctggccatgtgtgcttatccctataatcacttgcaccttttgcac |
200 |
Q |
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| T |
4489230 |
aaggatatgactggaacttgagctttgcttcctacttcagccaccatagctgcttcttgccatgtttgc--atccctataatcacttgcaccttttgcac |
4489327 |
T |
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| Q |
201 |
attaatcatctcttcggctgcaatacacgggctcatatt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
4489328 |
attaatcatctcttcggctgcaatacacgggctcatatt |
4489366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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